1X6H Dna Binding Protein date May 17, 2005
title Solution Structures Of The C2h2 Type Zinc Finger Domain Of H Transcriptional Repressor Ctcf
authors M.Sato, K.Saito, S.Koshiba, M.Inoue, T.Kigawa, S.Yokoyama, Riken S Genomicsproteomics Initiative (Rsgi)
compound source
Molecule: Transcriptional Repressor Ctcf
Chain: A
Fragment: C2h2 Type Zinc Finger Domain
Synonym: Ccctc-Binding Factor, Ctcfl Paralog, 11-Zinc Finge
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Ctcf
Expression_system_vector_type: Plasmid
Expression_system_plasmid: P040719-09
Other_details: Cell-Free Protein Synthesis
methodSolution NMR
ligand ZN enzyme
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (423 Kb) [Save to disk]
  • Biological Unit Coordinates (1x6h.pdb1.gz) 21 Kb
  • LPC: Ligand-Protein Contacts for 1X6H
  • CSU: Contacts of Structural Units for 1X6H
  • Original NMR restraints for 1X6H from PDB
  • Retrieve 1X6H in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1X6H from S2C, [Save to disk]
  • View 1X6H in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1X6H
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1X6H, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1x6h] [1x6h_A]
  • SWISS-PROT database: [P49711]
  • Domain organization of [CTCF_HUMAN] by SWISSPFAM
  • Domain found in 1X6H: [ZnF_C2H2 ] by SMART
  • Other resources with information on 1X6H
  • Community annotation for 1X6H at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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