1X8Y Structural Protein date Aug 19, 2004
title Human Lamin Coil 2b
authors S.V.Strelkov, J.Schumacher, P.Burkhard, U.Aebi, H.Herrmann
compound source
Molecule: Lamin Ac
Chain: A
Fragment: Human Lamin A Fragment (Residues 305-387)
Synonym: Lamin Fragment 2b, 70 Kda Lamin
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 65 2 2
R_factor 0.274 R_Free 0.305
crystal
cell
length a length b length c angle alpha angle beta angle gamma
89.267 89.267 75.589 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.20 Å
related structures by homologous chain: 1GK6
Primary referenceCrystal structure of the human lamin A coil 2B dimer: implications for the head-to-tail association of nuclear lamins., Strelkov SV, Schumacher J, Burkhard P, Aebi U, Herrmann H, J Mol Biol 2004 Oct 29;343(4):1067-80. PMID:15476822
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (17 Kb) [Save to disk]
  • Biological Unit Coordinates (1x8y.pdb1.gz) 25 Kb
  • CSU: Contacts of Structural Units for 1X8Y
  • Likely Quarternary Molecular Structure file(s) for 1X8Y
  • Structure Factors (65 Kb)
  • Retrieve 1X8Y in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1X8Y from S2C, [Save to disk]
  • Re-refined 1x8y structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1X8Y in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1X8Y
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 1X8Y, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1x8ya_, region A [Jmol] [rasmolscript] [script source]
  • Fold representative 1x8y from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1x8y_A] [1x8y]
  • SWISS-PROT database: [P02545]
  • Domain organization of [LMNA_HUMAN] by SWISSPFAM
  • Alignments of the sequence of 1X8Y with the sequences similar proteins can be viewed for 1X8Y's classification [LMNA_HUMAN] at ProtoMap. Click on "Neighbors List", then on the "See Alignments" button below the list.
  • A sequence distance tree ("phylogenetic tree") can be viewed for 1ACL's classification [LMNA_HUMAN] at ProtoMap. Click on the Cluster number.
  • Other resources with information on 1X8Y
  • Community annotation for 1X8Y at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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