1XC5 Transcription Corepressor date Sep 01, 2004
title Solution Structure Of The Smrt Deacetylase Activation Domain
authors A.Codina, J.D.Love, Y.Li, M.A.Lazar, D.Neuhaus, J.W.R.Schwabe
compound source
Molecule: Nuclear Receptor Corepressor 2
Chain: A
Fragment: Deacetylase Activation Domain (Residues 410-480)
Synonym: Smrt, N-Cor2, Silencing Mediator Of Retinoic Acid And Thyroid Hormone Receptor, Smrte, Thyroid-, Retinoic- Acid-Receptor-Associated Corepressor, T3 Receptor- Associating Factor, Trac, Ctg Repeat Protein 26, Smap270;
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_strain: Bl21 (De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pgex-4t-1
methodSolution NMR
Primary referenceFrom The Cover: Structural insights into the interaction and activation of histone deacetylase 3 by nuclear receptor corepressors., Codina A, Love JD, Li Y, Lazar MA, Neuhaus D, Schwabe JW, Proc Natl Acad Sci U S A 2005 Apr 26;102(17):6009-14. Epub 2005 Apr 18. PMID:15837933
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (545 Kb) [Save to disk]
  • CSU: Contacts of Structural Units for 1XC5
  • Original NMR restraints for 1XC5 from PDB
  • Experimental data, such as chemical shifts, at BioMagResBank (BMRB)
  • NMR Restraints Grid from BioMagResBank (BMRB)
  • Retrieve 1XC5 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1XC5 from S2C, [Save to disk]
  • View 1XC5 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1XC5
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 1XC5, from MSDmotif at EBI
  • Fold representative 1xc5 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1xc5_A] [1xc5]
  • SWISS-PROT database: [Q9Y618]
  • Domain organization of [NCOR2_HUMAN] by SWISSPFAM
  • Domain found in 1XC5: [SANT ] by SMART
  • Other resources with information on 1XC5
  • Community annotation for 1XC5 at PDBWiki (http://pdbwiki.org)
  • NMR Ensemble (OLDERADO: core, domain and representative structure database)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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