1XC9 Structure of a high-fidelity polymerase bound to a benzo[a]pyrene adduct that blocks replication date
authors Hsu, G.W., Huang, X., Luneva, N.P., Geacintov, N.E., Beese, L.S.
compound source
symmetry
R_factor
R_Free 0.255
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 1.90
ligand BAP, FRU, GLC, MG, SO4 enzyme
related structures by homologous chain: 1NJW, 3BDP
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceStructure of a high-fidelity DNA polymerase bound to a benzo[a]pyrene adduct that blocks replication., Hsu GW, Huang X, Luneva NP, Geacintov NE, Beese LS, J Biol Chem 2004 Nov 16;. PMID:15548515
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (114 Kb) [Save to disk]
  • Biological Unit Coordinates (1xc9.pdb1.gz) 109 Kb
  • LPC: Ligand-Protein Contacts for 1XC9
  • CSU: Contacts of Structural Units for 1XC9
  • Likely Quarternary Molecular Structure file(s) for 1XC9
  • Structure Factors (803 Kb)
  • Retrieve 1XC9 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1XC9 from S2C, [Save to disk]
  • Re-refined 1xc9 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1XC9 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1XC9
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 1XC9, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1xc9a1, region A:297-468 [Jmol] [rasmolscript] [script source]
        - Domain d1xc9a2, region A:469-876 [Jmol] [rasmolscript] [script source]
  • Fold representative 1xc9 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1xc9_C] [1xc9_B] [1xc9_A] [1xc9]
  • SWISS-PROT database: [P52026]
  • Domain organization of [DPO1_BACST] by SWISSPFAM
  • Domains found in 1XC9: [35EXOc] [POLAc ] by SMART
  • Other resources with information on 1XC9
  • Community annotation for 1XC9 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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