1XF7 Transcription date Sep 14, 2004
title High Resolution Nmr Structure Of The Wilms' Tumor Suppressor Protein (Wt1) Finger 3
authors M.J.Lachenmann, J.E.Ladbury, J.Dong, K.Huang, P.Carey, M.A.Weiss
compound source
Molecule: Wilms' Tumor Protein
Chain: A
Fragment: Zinc Finger 3
Synonym: Wt33; Wilms' Tumor Suppressor Protein
Engineered: Yes
Mutation: Yes
Synthetic: Yes
Other_details: Synthesized By Solid-Phase Synthesis. The Sequence Occurs Naturally Homo Sapiens (Human). The G28e And T29k Mutations Improve Sample Behavior Without Affecting The Structure
methodSolution NMR
ligand ZN enzyme
Primary referenceWhy zinc fingers prefer zinc: ligand-field symmetry and the hidden thermodynamics of metal ion selectivity., Lachenmann MJ, Ladbury JE, Dong J, Huang K, Carey P, Weiss MA, Biochemistry 2004 Nov 9;43(44):13910-25. PMID:15518539
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (329 Kb) [Save to disk]
  • LPC: Ligand-Protein Contacts for 1XF7
  • CSU: Contacts of Structural Units for 1XF7
  • Original NMR restraints for 1XF7 from PDB
  • Retrieve 1XF7 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1XF7 from S2C, [Save to disk]
  • View 1XF7 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1XF7
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 1XF7, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1xf7a_, region A [Jmol] [rasmolscript] [script source]
  • Fold representative 1xf7 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1xf7_A] [1xf7]
  • SWISS-PROT database: [P19544]
  • Domain organization of [WT1_HUMAN] by SWISSPFAM
  • Domain found in 1XF7: [ZnF_C2H2 ] by SMART
  • Other resources with information on 1XF7
  • Community annotation for 1XF7 at PDBWiki (http://pdbwiki.org)
  • NMR Ensemble (OLDERADO: core, domain and representative structure database)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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