1XF7 Transcription date Sep 14, 2004
title High Resolution Nmr Structure Of The Wilms' Tumor Suppressor Protein (Wt1) Finger 3
authors M.J.Lachenmann, J.E.Ladbury, J.Dong, K.Huang, P.Carey, M.A.Weiss
compound source
Molecule: Wilms' Tumor Protein
Chain: A
Fragment: Zinc Finger 3
Synonym: Wt33; Wilms' Tumor Suppressor Protein
Engineered: Yes
Mutation: Yes
Synthetic: Yes
Other_details: Synthesized By Solid-Phase Synthesis. The Sequence Occurs Naturally Homo Sapiens (Human). The G28e And T29k Mutations Improve Sample Behavior Without Affecting The Structure
methodSolution NMR
ligand ZN enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceWhy zinc fingers prefer zinc: ligand-field symmetry and the hidden thermodynamics of metal ion selectivity., Lachenmann MJ, Ladbury JE, Dong J, Huang K, Carey P, Weiss MA, Biochemistry 2004 Nov 9;43(44):13910-25. PMID:15518539
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (329 Kb) [Save to disk]
  • LPC: Ligand-Protein Contacts for 1XF7
  • CSU: Contacts of Structural Units for 1XF7
  • Original NMR restraints for 1XF7 from PDB
  • Retrieve 1XF7 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1XF7 from S2C, [Save to disk]
  • View 1XF7 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1XF7
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 1XF7, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1xf7a_, region A [Jmol] [rasmolscript] [script source]
  • Fold representative 1xf7 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1xf7_A] [1xf7]
  • SWISS-PROT database: [P19544]
  • Domain organization of [WT1_HUMAN] by SWISSPFAM
  • Domain found in 1XF7: [ZnF_C2H2 ] by SMART
  • Other resources with information on 1XF7
  • Community annotation for 1XF7 at PDBWiki (http://pdbwiki.org)
  • NMR Ensemble (OLDERADO: core, domain and representative structure database)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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