1XFB Lyase date Sep 14, 2004
title Human Brain Fructose 1,6-(Bis)Phosphate Aldolase (C Isozyme)
authors T.L.Arakaki, J.A.Pezza, M.A.Cronin, C.E.Hopkins, D.B.Zimmer, D.R.Tolan, K.N.Allen
compound source
Molecule: Aldolase C
Chain: A, B, C, D, E, F, G, H, I, J, K, L
Synonym: Fructose 1,6-(Bis)Phosphate Aldolase
Ec: 4.1.2.13
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Dh5alpha
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Ppb1
symmetry Space Group: P 1
R_factor 0.255 R_Free 0.261
crystal
cell
length a length b length c angle alpha angle beta angle gamma
83.872 121.986 129.517 107.96 108.58 97.39
method X-Ray Diffractionresolution 3.00 Å
ligand
enzyme Lyase E.C.4.1.2.13 BRENDA
related structures by homologous chain: 1XDM, 4ALD
Gene
Ontology
ChainFunctionProcessComponent
F, A, J, K, E, B, H, C, D, I, G, L
  • cytoskeletal protein binding...


  • Primary referenceStructure of human brain fructose 1,6-(bis)phosphate aldolase: linking isozyme structure with function., Arakaki TL, Pezza JA, Cronin MA, Hopkins CE, Zimmer DB, Tolan DR, Allen KN, Protein Sci 2004 Dec;13(12):3077-84. Epub 2004 Nov 10. PMID:15537755
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (590 Kb) [Save to disk]
  • Biological Unit Coordinates (1xfb.pdb1.gz) 198 Kb
  • Biological Unit Coordinates (1xfb.pdb2.gz) 199 Kb
  • Biological Unit Coordinates (1xfb.pdb3.gz) 200 Kb
  • CSU: Contacts of Structural Units for 1XFB
  • Likely Quarternary Molecular Structure file(s) for 1XFB
  • Structure Factors (966 Kb)
  • Retrieve 1XFB in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1XFB from S2C, [Save to disk]
  • Re-refined 1xfb structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1XFB in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1XFB
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 1XFB, from MSDmotif at EBI
  • Fold representative 1xfb from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1xfb_D] [1xfb_I] [1xfb_L] [1xfb_B] [1xfb_J] [1xfb_K] [1xfb_E] [1xfb_G] [1xfb_H] [1xfb] [1xfb_C] [1xfb_A] [1xfb_F]
  • SWISS-PROT database: [P09972]
  • Domain organization of [ALDOC_HUMAN] by SWISSPFAM
  • Other resources with information on 1XFB
  • Community annotation for 1XFB at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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