1XFE Lipid Transport, Endocytosis Exocytosis date Sep 14, 2004
title Solution Structure Of The La7-Egfa Pair From The Ldl Recepto
authors N.Beglova, H.Jeon, C.Fisher, S.C.Blacklow
compound source
Molecule: Low-Density Lipoprotein Receptor
Chain: A
Fragment: Sequence Database Residues 272-353: Includes Ldl- Class A 7 (Residues 274-313), Egf-Like 1 (314-353);
Synonym: Ldl Receptor, La7-Egfa Pair
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Ldlr
Expression_system: Escherichia Coli Bl21
Expression_system_taxid: 511693
Expression_system_strain: Bl21
Expression_system_vector_type: Plasmid
Expression_system_vector: Pdest17
Other_details: Gateway Expression System (Invitrogen)
methodSolution NMR
ligand CA enzyme
related structures by homologous chain: 1I0U
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceCooperation between Fixed and Low pH-Inducible Interfaces Controls Lipoprotein Release by the LDL Receptor., Beglova N, Jeon H, Fisher C, Blacklow SC, Mol Cell 2004 Oct 22;16(2):281-92. PMID:15494314
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (309 Kb) [Save to disk]
  • Biological Unit Coordinates (1xfe.pdb1.gz) 21 Kb
  • LPC: Ligand-Protein Contacts for 1XFE
  • CSU: Contacts of Structural Units for 1XFE
  • Original NMR restraints for 1XFE from PDB
  • Retrieve 1XFE in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1XFE from S2C, [Save to disk]
  • View 1XFE in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1XFE
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1XFE, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1xfea2, region A:1-44 [Jmol] [rasmolscript] [script source]
        - Domain d1xfea1, region A:45-83 [Jmol] [rasmolscript] [script source]
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1xfe_A] [1xfe]
  • SWISS-PROT database: [P01130]
  • Domain organization of [LDLR_HUMAN] by SWISSPFAM
  • Domains found in 1XFE: [EGF] [LDLa ] by SMART
  • Other resources with information on 1XFE
  • Community annotation for 1XFE at PDBWiki (http://pdbwiki.org)
  • NMR Ensemble (OLDERADO: core, domain and representative structure database)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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