1XG5 Oxidoreductase date Sep 16, 2004
title Structure Of Human Putative Dehydrogenase Mgc4172 In Complex
authors K.Kavanagh, S.Ng, S.Sharma, M.Vedadi, F.Von Delft, J.R.Walker, S.D Paganon, J.Bray, U.Oppermann, A.Edwards, C.Arrowsmith, M.Sundstr Structural Genomics Consortium (Sgc)
compound source
Molecule: Arpg836
Chain: A, B, C, D
Synonym: Mgc4172 Gene Product
Engineered: Yes
 Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Mgc4172
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Rosetta2
Expression_system_vector_type: Plasmid
Expression_system_plasmid: P11 (Pet11 Derivative)
symmetry Space Group: P 1 21 1
R_factor 0.162 R_Free 0.206
crystal
cell
length a length b length c angle alpha angle beta angle gamma
54.710 124.669 75.130 90.00 97.23 90.00
method X-Ray Diffractionresolution 1.53 Å
ligand ACY, NAP enzyme
note 1XG5 is a representative structure
Gene
Ontology
ChainFunctionProcessComponent
A, D, C, B


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (180 Kb) [Save to disk]
  • Biological Unit Coordinates (1xg5.pdb1.gz) 172 Kb
  • Biological Unit Coordinates (1xg5.pdb2.gz) 171 Kb
  • LPC: Ligand-Protein Contacts for 1XG5
  • CSU: Contacts of Structural Units for 1XG5
  • Likely Quarternary Molecular Structure file(s) for 1XG5
  • Structure Factors (1078 Kb)
  • Retrieve 1XG5 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1XG5 from S2C, [Save to disk]
  • Re-refined 1xg5 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 1XG5 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 1XG5
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1XG5, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1xg5a_, region A [Jmol] [rasmolscript] [script source]
        - Domain d1xg5b_, region B [Jmol] [rasmolscript] [script source]
        - Domain d1xg5c_, region C [Jmol] [rasmolscript] [script source]
        - Domain d1xg5d_, region D [Jmol] [rasmolscript] [script source]
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1xg5_B] [1xg5] [1xg5_A] [1xg5_C] [1xg5_D]
  • SWISS-PROT database: [Q6UWP2]
  • Domain organization of [DHR11_HUMAN] by SWISSPFAM
    • Other resources with information on 1XG5
  • Community annotation for 1XG5 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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