1XI4	Endocytosis Exocytosis	date	Sep 21, 2004
title	Clathrin D6 Coat
authors	A.Fotin, Y.Cheng, P.Sliz, N.Grigorieff, S.C.Harrison, T.Kirchhaus
compound		source
Molecule: Clathrin Heavy Chain Chain: A, B, C, D, E, F, G, H, I Fragment: Residues 1-1630		Organism_scientific: Bos Taurus Organism_common: Cattle Organism_taxid: 9913 Tissue: Brain
Molecule: Clathrin Light Chain A Chain: J, K, L, M, N, O, P, Q, R Fragment: Residues 95-164 Synonym: Lca		Organism_scientific: Bos Taurus Organism_common: Cattle Organism_taxid: 9913 Tissue: Brain
symmetry	Space Group: P 1	R_factor R_Free
crystal cell	length a length b length c angle alpha angle beta angle gamma 1.000 1.000 1.000 90.00 90.00 90.00
method	Electron Microscopy	resolution	7.90 Å
note	1XI4 (Molecule of the Month:pdb88)
Gene Ontology	Chain Function Process Component F, E, C, A, B, H, D, I, G N, K, Q, M, L, J, O, P, R
Primary reference	Molecular model for a complete clathrin lattice from electron cryomicroscopy., Fotin A, Cheng Y, Sliz P, Grigorieff N, Harrison SC, Kirchhausen T, Walz T, Nature 2004 Oct 24;. PMID:15502812

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (278 Kb) [Save to disk] Biological Unit Coordinates (1xi4.pdb1.gz) 3236 Kb CSU: Contacts of Structural Units for 1XI4 Retrieve 1XI4 in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 1XI4 from S2C, [Save to disk]

View 1XI4 in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 1XI4

Ramachandran plot from PDBSum

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 1XI4, from MSDmotif at EBI Classification of representative domains in scop (Structural Classification of Proteins)     - Domain d1xi4a_, region A [Jmol] [rasmolscript] [script source]     - Domain d1xi4b_, region B [Jmol] [rasmolscript] [script source]     - Domain d1xi4c_, region C [Jmol] [rasmolscript] [script source]     - Domain d1xi4d_, region D [Jmol] [rasmolscript] [script source]     - Domain d1xi4e_, region E [Jmol] [rasmolscript] [script source]     - Domain d1xi4f_, region F [Jmol] [rasmolscript] [script source]     - Domain d1xi4g_, region G [Jmol] [rasmolscript] [script source]     - Domain d1xi4h_, region H [Jmol] [rasmolscript] [script source]     - Domain d1xi4i_, region I [Jmol] [rasmolscript] [script source]     - Domain d1xi4j_, region J [Jmol] [rasmolscript] [script source]     - Domain d1xi4k_, region K [Jmol] [rasmolscript] [script source]     - Domain d1xi4l_, region L [Jmol] [rasmolscript] [script source]     - Domain d1xi4m_, region M [Jmol] [rasmolscript] [script source]     - Domain d1xi4n_, region N [Jmol] [rasmolscript] [script source]     - Domain d1xi4o_, region O [Jmol] [rasmolscript] [script source]     - Domain d1xi4p_, region P [Jmol] [rasmolscript] [script source]     - Domain d1xi4q_, region Q [Jmol] [rasmolscript] [script source]     - Domain d1xi4r_, region R [Jmol] [rasmolscript] [script source]

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [1xi4_F] [1xi4_D] [1xi4_K] [1xi4_E] [1xi4_Q] [1xi4_M] [1xi4_J] [1xi4_R] [1xi4_P] [1xi4_I] [1xi4] [1xi4_B] [1xi4_C] [1xi4_N] [1xi4_G] [1xi4_O] [1xi4_H] [1xi4_A] [1xi4_L] SWISS-PROT database: [P04973] [P49951] Domain organization of [CLCA_BOVIN] [CLH1_BOVIN] by SWISSPFAM Domain found in 1XI4: [CLH ] by SMART

Other resources with information on 1XI4

Community annotation for 1XI4 at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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