1XKS	Protein Transport	date	Sep 29, 2004
title	The Crystal Structure Of The N-Terminal Domain Of Nup133 Rev Beta-Propeller Fold Common To Several Nucleoporins
authors	I.C.Berke, T.Boehmer, G.Blobel, T.U.Schwartz
compound		source
Molecule: Nuclear Pore Complex Protein Nup133 Chain: A Synonym: Nucleoporin Nup133, 133 Kda Nucleoporin Engineered: Yes Mutation: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Nup133 Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_strain: Bl21 Codonplus(De3)-Ril Expression_system_vector_type: Plasmid Expression_system_plasmid: Pet28
symmetry	Space Group: P 43 21 2	R_factor 0.196 R_Free 0.236
crystal cell	length a length b length c angle alpha angle beta angle gamma 84.588 84.588 139.048 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	2.35 Å
Gene Ontology	Chain Function Process Component A
Primary reference	Structural and functional analysis of Nup133 domains reveals modular building blocks of the nuclear pore complex., Berke IC, Boehmer T, Blobel G, Schwartz TU, J Cell Biol 2004 Nov 22;167(4):591-7. PMID:15557116

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (66 Kb) [Save to disk] Biological Unit Coordinates (1xks.pdb1.gz) 60 Kb CSU: Contacts of Structural Units for 1XKS Likely Quarternary Molecular Structure file(s) for 1XKS Structure Factors (146 Kb) Retrieve 1XKS in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 1XKS from S2C, [Save to disk] Re-refined 1xks structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 1XKS in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 1XKS

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 1XKS, from MSDmotif at EBI Classification of representative domains in scop (Structural Classification of Proteins)     - Domain d1xksa_, region A [Jmol] [rasmolscript] [script source]

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [1xks] [1xks_A] SWISS-PROT database: [Q8WUM0] Belongs to the eukaryotic nuclear pore complex (e-npc) family according to TCDB. Domain organization of [NU133_HUMAN] by SWISSPFAM

Other resources with information on 1XKS

Community annotation for 1XKS at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

Movements, Movies and Images

Images from IMB Jena Image Library of Biological Macromolecules.

You may enter another PDB ID code

Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]

---

OCA© by Jaime Prilusky, 1996-2014,2022 Bioinformatics Unit Weizmann Institute of Science

---