1XM9 Cell Adhesion date Oct 01, 2004
title Structure Of The Armadillo Repeat Domain Of Plakophilin 1
authors H.J.Choi, W.I.Weis
compound source
Molecule: Plakophilin 1
Chain: A
Fragment: Armadillo Repeat Domain
Engineered: Yes
 Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Pkp1
Expression_system: Escherichia Coli Bl21
Expression_system_taxid: 511693
Expression_system_strain: Bl21
Expression_system_vector_type: Plasmid
symmetry Space Group: C 2 2 21
R_factor 0.255 R_Free 0.324
crystal
cell
length a length b length c angle alpha angle beta angle gamma
53.355 131.977 142.044 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.80 Å
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceStructure of the armadillo repeat domain of plakophilin 1., Choi HJ, Weis WI, J Mol Biol 2005 Feb 11;346(1):367-76. Epub 2004 Dec 19. PMID:15663951
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (70 Kb) [Save to disk]
  • Biological Unit Coordinates (1xm9.pdb1.gz) 65 Kb
  • CSU: Contacts of Structural Units for 1XM9
  • Likely Quarternary Molecular Structure file(s) for 1XM9
  • Structure Factors (112 Kb)
  • Retrieve 1XM9 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1XM9 from S2C, [Save to disk]
  • Re-refined 1xm9 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 1XM9 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 1XM9
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1XM9, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1xm9] [1xm9_A]
  • SWISS-PROT database: [Q13835]
  • Domain organization of [PKP1_HUMAN] by SWISSPFAM
  • Domain found in 1XM9: [ARM ] by SMART
    • Other resources with information on 1XM9
  • Community annotation for 1XM9 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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