1XMJ Membrane Protein, Hydrolase date Oct 02, 2004
title Crystal Structure Of Human Deltaf508 Human Nbd1 Domain With Atp
authors H.A.Lewis, X.Zhao, C.Wang, J.M.Sauder, I.Rooney, B.W.Noland, D.Lorimer, M.C.Kearins, K.Conners, B.Condon, P.C.Maloney, W.B.Guggino, J.F.Hunt, S.Emtage, Structural Genomix
compound source
Molecule: Cystic Fibrosis Transmembrane Conductance Regulator;
Chain: A
Fragment: Nucleotide Binding Domain One
Synonym: Cftr; Camp- Dependent Chloride Channel
Ec: 3.6.3.49
Engineered: Yes
Mutation: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Cftr
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_vector_type: Plasmid
symmetry Space Group: P 43 21 2
R_factor 0.220 R_Free 0.287
crystal
cell
length a length b length c angle alpha angle beta angle gamma
59.793 59.793 144.398 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.30 Å
ligand ATP, MG enzyme Hydrolase E.C.3.6.3.49 BRENDA
related structures by homologous chain: 1R0Z, 1XMI
Primary referenceImpact of the {Delta}F508 Mutation in First Nucleotide-binding Domain of Human Cystic Fibrosis Transmembrane Conductance Regulator on Domain Folding and Structure., Lewis HA, Zhao X, Wang C, Sauder JM, Rooney I, Noland BW, Lorimer D, Kearins MC, Conners K, Condon B, Maloney PC, Guggino WB, Hunt JF, Emtage S, J Biol Chem 2005 Jan 14;280(2):1346-53. Epub 2004 Nov 03. PMID:15528182
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (48 Kb) [Save to disk]
  • Biological Unit Coordinates (1xmj.pdb1.gz) 43 Kb
  • LPC: Ligand-Protein Contacts for 1XMJ
  • CSU: Contacts of Structural Units for 1XMJ
  • Likely Quarternary Molecular Structure file(s) for 1XMJ
  • Structure Factors (110 Kb)
  • Retrieve 1XMJ in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1XMJ from S2C, [Save to disk]
  • Re-refined 1xmj structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1XMJ in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1XMJ
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 1XMJ, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1xmja_, region A [Jmol] [rasmolscript] [script source]
  • Fold representative 1xmj from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1xmj_A] [1xmj]
  • SWISS-PROT database: [P13569]
  • Belongs to the atp-binding cassette (abc) superfamily according to TCDB.
  • Domain organization of [CFTR_HUMAN] by SWISSPFAM
  • Domain found in 1XMJ: [AAA ] by SMART
  • Alignments of the sequence of 1XMJ with the sequences similar proteins can be viewed for 1XMJ's classification [CFTR_HUMAN] at ProtoMap. Click on "Neighbors List", then on the "See Alignments" button below the list.
  • A sequence distance tree ("phylogenetic tree") can be viewed for 1ACL's classification [CFTR_HUMAN] at ProtoMap. Click on the Cluster number.
  • Other resources with information on 1XMJ
  • Community annotation for 1XMJ at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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