1XOK Viral Protein Rna date Oct 06, 2004
title Crystal Structure Of Alfalfa Mosaic Virus Rna 3'Utr In Compl Coat Protein N Terminal Peptide
authors L.M.Guogas, D.J.Filman, J.M.Hogle, L.Gehrke
compound source
Molecule: Alfalfa Mosaic Virus Rna 3' Utr
Chain: A
Fragment: Amv Rna Bases 843-872
Engineered: Yes
Synthetic: Yes
Other_details: Rna Synthesis Dharmacon Research

Molecule: Alfalfa Mosaic Virus Rna 3' Utr
Chain: B
Fragment: Amv Rna Bases 873-881
Engineered: Yes

Synthetic: Yes
Other_details: Rna Synthesis Dharmacon Research

Molecule: Coat Protein
Chain: C, D
Fragment: Amv Coat Protein Residues 1-26
Engineered: Yes

Synthetic: Yes
Other_details: Peptide Synthesis By Mit Biopolymers Laborat
symmetry Space Group: C 2 2 21
R_factor 0.249 R_Free 0.269
crystal
cell
length a length b length c angle alpha angle beta angle gamma
50.100 123.000 53.600 90.00 90.00 90.00
method X-Ray Diffractionresolution 3.00 Å
ligand BR enzyme
Primary referenceCofolding organizes alfalfa mosaic virus RNA and coat protein for replication., Guogas LM, Filman DJ, Hogle JM, Gehrke L, Science 2004 Dec 17;306(5704):2108-11. PMID:15604410
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (26 Kb) [Save to disk]
  • Biological Unit Coordinates (1xok.pdb1.gz) 21 Kb
  • LPC: Ligand-Protein Contacts for 1XOK
  • CSU: Contacts of Structural Units for 1XOK
  • Likely Quarternary Molecular Structure file(s) for 1XOK
  • Structure Factors (32 Kb)
  • Retrieve 1XOK in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1XOK from S2C, [Save to disk]
  • Re-refined 1xok structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1XOK in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1XOK
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 1XOK, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1xokc_, region C [Jmol] [rasmolscript] [script source]
        - Domain d1xokd_, region D [Jmol] [rasmolscript] [script source]
  • Fold representative 1xok from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1xok_B] [1xok] [1xok_A] [1xok_C] [1xok_D]
  • SWISS-PROT database: [P24264]
  • Domain organization of [COAT_AMVYS] by SWISSPFAM
  • Other resources with information on 1XOK
  • Community annotation for 1XOK at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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