1XQ8 Lipid Binding Protein date Oct 11, 2004
title Human Micelle-Bound Alpha-Synuclein
authors T.S.Ulmer, A.Bax, N.B.Cole, R.L.Nussbaum
compound source
Molecule: Alpha-Synuclein
Chain: A
Synonym: Non-A Beta Component Of Ad Amyloid, Non-A4 Component Of Amyloid, Nacp;
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Snca, Nacp
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_vector: Pet-41
methodSolution NMR
subcellular loc. Membrane localization by OPM: Eukaryotic plasma membrane
extracellular side
cytoplasmic side
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceStructure and dynamics of micelle-bound human alpha -synuclein., Ulmer TS, Bax A, Cole NB, Nussbaum RL, J Biol Chem 2004 Dec 22;. PMID:15615727
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (41 Kb) [Save to disk]
  • CSU: Contacts of Structural Units for 1XQ8
  • Original NMR restraints for 1XQ8 from PDB
  • Retrieve 1XQ8 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1XQ8 from S2C, [Save to disk]
  • View 1XQ8 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1XQ8
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 1XQ8, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1xq8a_, region A [Jmol] [rasmolscript] [script source]
  • Fold representative 1xq8 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1xq8] [1xq8_A]
  • SWISS-PROT database: [P37840]
  • Belongs to the synuclein (synuclein) family according to TCDB.
  • Domain organization of [SYUA_HUMAN] by SWISSPFAM
  • Alignments of the sequence of 1XQ8 with the sequences similar proteins can be viewed for 1XQ8's classification [SYUA_HUMAN] at ProtoMap. Click on "Neighbors List", then on the "See Alignments" button below the list.
  • A sequence distance tree ("phylogenetic tree") can be viewed for 1ACL's classification [SYUA_HUMAN] at ProtoMap. Click on the Cluster number.
  • Other resources with information on 1XQ8
  • Community annotation for 1XQ8 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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