1XRG Structural Genomics, Unknown Function date Oct 14, 2004
title Conserved Hypothetical Protein From Clostridium Thermocellum
authors M.Zhao, J.Chang, J.Habel, I.Kataeva, H.Xu, L.Chen, D.Lee, J.Nguyen, H.Chang, P.Horanyi, Q.Florence, W.Zhou, W.Tempel, D.Lin, H.Zhang, W.B.Arendall Iii, L.Ljundahl, Z.J.Liu, J.Rose, J.S.Richardson, D.C.Richardson, B.C.Wang, Southeast Collaboratory For Struct Genomics (Secsg)
compound source
Molecule: Putative Translation Initiation Inhibitor, Yjgf F
Chain: A, B, C
Engineered: Yes
 Organism_scientific: Clostridium Thermocellum
Organism_taxid: 1515
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 32 2 1
R_factor 0.193 R_Free 0.225
crystal
cell
length a length b length c angle alpha angle beta angle gamma
80.436 80.436 137.202 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.20 Å
ligand MSE, UNX enzyme
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (68 Kb) [Save to disk]
  • Biological Unit Coordinates (1xrg.pdb1.gz) 64 Kb
  • LPC: Ligand-Protein Contacts for 1XRG
  • CSU: Contacts of Structural Units for 1XRG
  • Likely Quarternary Molecular Structure file(s) for 1XRG
  • Structure Factors (195 Kb)
  • Retrieve 1XRG in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1XRG from S2C, [Save to disk]
  • Re-refined 1xrg structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 1XRG in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 1XRG
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1XRG, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1xrga_, region A [Jmol] [rasmolscript] [script source]
        - Domain d1xrgb_, region B [Jmol] [rasmolscript] [script source]
        - Domain d1xrgc_, region C [Jmol] [rasmolscript] [script source]
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1xrg_C] [1xrg] [1xrg_A] [1xrg_B]
  • SWISS-PROT database: [A3DJ68]
  • Domain organization of [A3DJ68_CLOTH] by SWISSPFAM
    • Other resources with information on 1XRG
  • Community annotation for 1XRG at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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