1XVP Dna Binding Protein date Oct 28, 2004
title Crystal Structure Of Carrxr Heterodimer Bound With Src1 Peptide, Fatty Acid And Citco
authors R.X.Xu, M.H.Lambert, B.B.Wisely, E.N.Warren, E.E.Weinert, G.M.Waitt, J.D.Williams, L.B.Moore, T.M.Willson, J.T.Moore
compound source
Molecule: Retinoic Acid Receptor Rxr-Alpha
Chain: A, C
Fragment: Lbd Domain
Synonym: Constitutive Androstane Receptor, Car, Orphan Nuclear Receptor Mb67;
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Nr1i3, Car
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Orphan Nuclear Receptor Nr1i3
Chain: B, D
Fragment: Lbd Domain
Synonym: Retinoid X Receptor Alpha
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Rxra, Nr2b1
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Nuclear Receptor Coactivator 1 Isoform 1
Chain: E, F, G, H
Fragment: Synthetic Peptide-13 Residues
Engineered: Yes

Synthetic: Yes
Other_details: Chemically Synthesized
symmetry Space Group: P 32 2 1
R_factor 0.180 R_Free 0.234
crystal
cell
length a length b length c angle alpha angle beta angle gamma
128.020 128.020 212.175 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.60 Å
ligand CID, F15 enzyme
related structures by homologous chain: 1G1U, 1XV9
Gene
Ontology
ChainFunctionProcessComponent
A, C


D, B


Primary referenceA Structural Basis for Constitutive Activity in the Human CAR/RXRalpha Heterodimer., Xu RX, Lambert MH, Wisely BB, Warren EN, Weinert EE, Waitt GM, Williams JD, Collins JL, Moore LB, Willson TM, Moore JT, Mol Cell 2004 Dec 22;16(6):919-28. PMID:15610735
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (174 Kb) [Save to disk]
  • Biological Unit Coordinates (1xvp.pdb1.gz) 85 Kb
  • Biological Unit Coordinates (1xvp.pdb2.gz) 87 Kb
  • Biological Unit Coordinates (1xvp.pdb3.gz) 168 Kb
  • Biological Unit Coordinates (1xvp.pdb4.gz) 164 Kb
  • Biological Unit Coordinates (1xvp.pdb5.gz) 83 Kb
  • LPC: Ligand-Protein Contacts for 1XVP
  • CSU: Contacts of Structural Units for 1XVP
  • Likely Quarternary Molecular Structure file(s) for 1XVP
  • Structure Factors (739 Kb)
  • Retrieve 1XVP in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1XVP from S2C, [Save to disk]
  • Re-refined 1xvp structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1XVP in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1XVP
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 1XVP, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1xvpa_, region A [Jmol] [rasmolscript] [script source]
        - Domain d1xvpb_, region B [Jmol] [rasmolscript] [script source]
        - Domain d1xvpc_, region C [Jmol] [rasmolscript] [script source]
        - Domain d1xvpd_, region D [Jmol] [rasmolscript] [script source]
  • Fold representative 1xvp from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1xvp_D] [1xvp_F] [1xvp_A] [1xvp_G] [1xvp_C] [1xvp_B] [1xvp_E] [1xvp_H] [1xvp]
  • SWISS-PROT database: [Q15788] [Q14994] [P19793]
  • Domain organization of [NCOA1_HUMAN] [NR1I3_HUMAN] [RXRA_HUMAN] by SWISSPFAM
  • Domain found in 1XVP: [HOLI ] by SMART
  • Other resources with information on 1XVP
  • Community annotation for 1XVP at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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