1XW6 Transferase date Oct 29, 2004
title 1.9 Angstrom Resolution Structure Of Human Glutathione S-Tra M1a-1a Complexed With Glutathione
authors Y.Patskovsky, L.Patskovska, S.C.Almo, I.Listowsky
compound source
Molecule: Glutathione S-Transferase Mu 1
Chain: A, B, C, D
Synonym: Gstm1-1, Gst Class-Mu 1, Gstm1a-1a, Gstm1b-1b, Hb Gth4;
Ec: 2.5.1.18
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Gstm1, Gst1
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet3a-Hgstm1a
symmetry Space Group: P 21 21 21
R_factor 0.227 R_Free 0.247
crystal
cell
length a length b length c angle alpha angle beta angle gamma
55.970 84.380 212.180 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.90 Å
ligand GSH enzyme Transferase E.C.2.5.1.18 BRENDA
related structures by homologous chain: 1GSU, 4GST, 5FWG
Gene
Ontology
ChainFunctionProcessComponent
A, D, C, B


Primary referenceTransition state model and mechanism of nucleophilic aromatic substitution reactions catalyzed by human glutathione S-transferase M1a-1a., Patskovsky Y, Patskovska L, Almo SC, Listowsky I, Biochemistry. 2006 Mar 28;45(12):3852-62. PMID:16548513
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (164 Kb) [Save to disk]
  • Biological Unit Coordinates (1xw6.pdb1.gz) 81 Kb
  • Biological Unit Coordinates (1xw6.pdb2.gz) 81 Kb
  • LPC: Ligand-Protein Contacts for 1XW6
  • CSU: Contacts of Structural Units for 1XW6
  • Likely Quarternary Molecular Structure file(s) for 1XW6
  • Structure Factors (601 Kb)
  • Retrieve 1XW6 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1XW6 from S2C, [Save to disk]
  • Re-refined 1xw6 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1XW6 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1XW6
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1XW6, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1xw6a2, region A:1-84 [Jmol] [rasmolscript] [script source]
        - Domain d1xw6a1, region A:85-217 [Jmol] [rasmolscript] [script source]
        - Domain d1xw6b2, region B:1-84 [Jmol] [rasmolscript] [script source]
        - Domain d1xw6b1, region B:85-217 [Jmol] [rasmolscript] [script source]
        - Domain d1xw6c2, region C:1-84 [Jmol] [rasmolscript] [script source]
        - Domain d1xw6c1, region C:85-217 [Jmol] [rasmolscript] [script source]
        - Domain d1xw6d2, region D:1-84 [Jmol] [rasmolscript] [script source]
        - Domain d1xw6d1, region D:85-217 [Jmol] [rasmolscript] [script source]
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1xw6_D] [1xw6] [1xw6_A] [1xw6_B] [1xw6_C]
  • SWISS-PROT database: [P09488]
  • Domain organization of [GSTM1_HUMAN] by SWISSPFAM
  • Other resources with information on 1XW6
  • Community annotation for 1XW6 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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