1XXW Hydrolase date Nov 09, 2004
title Structure Of Zinc Induced Heterodimer Of Two Calcium Free Is Phospholipase A2 From Naja Naja Sagittifera At 2.7a Resolut
authors T.Jabeen, S.Sharma, N.Singh, R.K.Singh, A.K.Verma, M.Paramasivam, A.Srinivasan, T.P.Singh
compound source
Molecule: Phospholipase A2 Isoform 1
Chain: A
Synonym: Phosphatidylcholine 2-Acylhydrolase
Ec: 3.1.1.4
Organism_scientific: Naja Sagittifera
Organism_taxid: 195058
Secretion: Venom

Molecule: Phospholipase A2 Isoform 2
Chain: B
Synonym: Phosphatidylcholine 2-Acylhydrolase
Ec: 3.1.1.4

Organism_scientific: Naja Sagittifera
Organism_taxid: 195058
Secretion: Venom
symmetry Space Group: P 41
R_factor 0.188 R_Free 0.232
crystal
cell
length a length b length c angle alpha angle beta angle gamma
65.467 65.467 58.427 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.70 Å
ligand ACY, ZN enzyme Hydrolase E.C.3.1.1.4 BRENDA
related structures by homologous chain: 1A3F, 1MH2
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceStructure of the zinc-induced heterodimer of two calcium-free isoforms of phospholipase A(2) from Naja naja sagittifera at 2.7 A resolution., Jabeen T, Sharma S, Singh N, Singh RK, Verma AK, Paramasivam M, Srinivasan A, Singh TP, Acta Crystallogr D Biol Crystallogr 2005 Mar;61(Pt 3):302-8. Epub 2005 Feb, 24. PMID:15735340
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (46 Kb) [Save to disk]
  • Biological Unit Coordinates (1xxw.pdb1.gz) 41 Kb
  • LPC: Ligand-Protein Contacts for 1XXW
  • CSU: Contacts of Structural Units for 1XXW
  • Likely Quarternary Molecular Structure file(s) for 1XXW
  • Retrieve 1XXW in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1XXW from S2C, [Save to disk]
  • View 1XXW in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1XXW
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1XXW, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1xxw_A] [1xxw_B] [1xxw]
  • SWISS-PROT database: [P60043] [P60044]
  • Domain organization of [PA21B_NAJSG] [PA22_NAJSG] by SWISSPFAM
  • Domain found in 1XXW: [PA2c ] by SMART
  • Other resources with information on 1XXW
  • Community annotation for 1XXW at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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