1XYH Isomerase date Nov 10, 2004
title Crystal Structure Of Recombinant Human Cyclophilin J
authors L.L.Huang, X.M.Zhao, C.Q.Huang, L.Yu, Z.X.Xia
compound source
Molecule: Cyclophilin-Like Protein Ppil3b
Chain: A
Synonym: Cyclophilin J
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Organ: Fetal Brain
Gene: Ppil3b
Expression_system: Escherichia Coli Bl21
Expression_system_taxid: 511693
Expression_system_strain: Bl21
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Ptxb1
symmetry Space Group: P 31 2 1
R_factor 0.175 R_Free 0.236
length a length b length c angle alpha angle beta angle gamma
41.309 41.309 172.116 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.60 Å
enzyme Isomerase E.C. BRENDA

  • catalytic step 2 spliceosome...
  • Primary referenceStructure of recombinant human cyclophilin J, a novel member of the cyclophilin family., Huang LL, Zhao XM, Huang CQ, Yu L, Xia ZX, Acta Crystallogr D Biol Crystallogr 2005 Mar;61(Pt 3):316-21. Epub 2005, Feb 24. PMID:15735342
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (30 Kb) [Save to disk]
  • Biological Unit Coordinates (1xyh.pdb1.gz) 27 Kb
  • CSU: Contacts of Structural Units for 1XYH
  • Likely Quarternary Molecular Structure file(s) for 1XYH
  • Structure Factors (78 Kb)
  • Retrieve 1XYH in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1XYH from S2C, [Save to disk]
  • Re-refined 1xyh structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1XYH in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1XYH
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 1XYH, from MSDmotif at EBI
  • Fold representative 1xyh from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1xyh_A] [1xyh]
  • SWISS-PROT database: [Q9H2H8]
  • Domain organization of [PPIL3_HUMAN] by SWISSPFAM
  • Other resources with information on 1XYH
  • Community annotation for 1XYH at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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