1XZ9 Cell Adhesion date Nov 12, 2004
title Structure Of Af-6 Pdz Domain
authors M.Joshi, P.Boisguerin, D.Leitner, R.Volkmer-Engert, K.Moelling, M.Schade, P.Schmieder, G.Krause, H.Oschkinat
compound source
Molecule: Afadin
Chain: A
Fragment: Af-6 Pdz Domain
Synonym: Af-6 Protein
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 562
methodSolution NMR
Primary referenceDiscovery of low-molecular-weight ligands for the AF6 PDZ domain., Joshi M, Vargas C, Boisguerin P, Diehl A, Krause G, Schmieder P, Moelling K, Hagen V, Schade M, Oschkinat H, Angew Chem Int Ed Engl. 2006 Jun 2;45(23):3790-5. PMID:16671149
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (503 Kb) [Save to disk]
  • CSU: Contacts of Structural Units for 1XZ9
  • Retrieve 1XZ9 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1XZ9 from S2C, [Save to disk]
  • View 1XZ9 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1XZ9
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 1XZ9, from MSDmotif at EBI
  • Fold representative 1xz9 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1xz9_A] [1xz9]
  • SWISS-PROT database: [P55196]
  • Domain organization of [AFAD_HUMAN] by SWISSPFAM
  • Domain found in 1XZ9: [PDZ ] by SMART
  • Other resources with information on 1XZ9
  • Community annotation for 1XZ9 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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