1XZX Hormone Growth Factor Receptor date Nov 12, 2004
title Thyroxine-Thyroid Hormone Receptor Interactions
authors B.Sandler, P.Webb, J.W.Apriletti, B.R.Huber, M.Togashi, S.T.Cunha S.Juric, S.Nilsson, R.Wagner, R.J.Fletterick, J.D.Baxter
compound source
Molecule: Thyroid Hormone Receptor Beta-1
Chain: X
Fragment: Ligand Binding Domain (Residues 202-461)
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Thrb, Erba2, Nr1a2, Thr1
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: B834
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet28-Trbe202
symmetry Space Group: P 31 2 1
R_factor 0.185 R_Free 0.244
crystal
cell
length a length b length c angle alpha angle beta angle gamma
68.764 68.764 130.943 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.50 Å
ligand CAC, T3 BindingDB enzyme
related structures by homologous chain: 1NAV, 1NQ2
Gene
Ontology
ChainFunctionProcessComponent
X


Primary referenceThyroxine-thyroid hormone receptor interactions., Sandler B, Webb P, Apriletti JW, Huber BR, Togashi M, Cunha Lima ST, Juric S, Nilsson S, Wagner R, Fletterick RJ, Baxter JD, J Biol Chem 2004 Oct 4;. PMID:15466465
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (47 Kb) [Save to disk]
  • Biological Unit Coordinates (1xzx.pdb1.gz) 41 Kb
  • Biological Unit Coordinates (1xzx.pdb2.gz) 81 Kb
  • LPC: Ligand-Protein Contacts for 1XZX
  • CSU: Contacts of Structural Units for 1XZX
  • Likely Quarternary Molecular Structure file(s) for 1XZX
  • Structure Factors (119 Kb)
  • Retrieve 1XZX in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1XZX from S2C, [Save to disk]
  • Re-refined 1xzx structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1XZX in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1XZX
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1XZX, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1xzxx_, region X [Jmol] [rasmolscript] [script source]
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1xzx_X] [1xzx]
  • SWISS-PROT database: [P10828]
  • Domain organization of [THB_HUMAN] by SWISSPFAM
  • Domain found in 1XZX: [HOLI ] by SMART
  • Other resources with information on 1XZX
  • Community annotation for 1XZX at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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