1Y02 Metal Binding Protein date Nov 14, 2004
title Crystal Structure Of A Fyve-Type Domain From Caspase Regulator Carp2
authors M.D.Tibbetts, L.Gu, E.N.Shiozaki, Y.Shi
compound source
Molecule: Fyve-Ring Finger Protein Sakura
Chain: A
Fragment: Carp2 Fragment (Residues 26-145)
Synonym: Carp2
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 31
R_factor 0.206 R_Free 0.234
length a length b length c angle alpha angle beta angle gamma
51.196 51.196 38.564 90.00 90.00 120.00
method X-Ray Diffractionresolution 1.80 Å
ligand ZN enzyme
Primary referenceCrystal structure of a FYVE-type zinc finger domain from the caspase regulator CARP2., Tibbetts MD, Shiozaki EN, Gu L, McDonald ER 3rd, El-Deiry WS, Shi Y, Structure (Camb) 2004 Dec;12(12):2257-63. PMID:15576038
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (22 Kb) [Save to disk]
  • Biological Unit Coordinates (1y02.pdb1.gz) 19 Kb
  • LPC: Ligand-Protein Contacts for 1Y02
  • CSU: Contacts of Structural Units for 1Y02
  • Likely Quarternary Molecular Structure file(s) for 1Y02
  • Retrieve 1Y02 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1Y02 from S2C, [Save to disk]
  • View 1Y02 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1Y02
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 1Y02, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1y02a2, region A:20-70 [Jmol] [rasmolscript] [script source]
        - Domain d1y02a1, region A:71-114 [Jmol] [rasmolscript] [script source]
  • Fold representative 1y02 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1y02_A] [1y02]
  • SWISS-PROT database: [Q8WZ73]
  • Domain organization of [RFFL_HUMAN] by SWISSPFAM
  • Domain found in 1Y02: [FYVE ] by SMART
  • Other resources with information on 1Y02
  • Community annotation for 1Y02 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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