1Y1I	Oxidoreductase	date	Nov 18, 2004
title	Hyuman Formylglycine Generating Enzyme, Reduced Form
authors	M.G.Rudolph, A.Dickmanns, R.Ficner
compound		source
Molecule: C-Alpha-Formyglycine-Generating Enzyme Chain: X Fragment: Residues 73-383 Synonym: Fge Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Expression_system: Homo Sapiens Expression_system_common: Human Expression_system_taxid: 9606 Expression_system_cell_line: Ht1080 Expression_system_cell: Fibrosarcoma Tumor Cells
symmetry	Space Group: P 21 21 2	R_factor 0.150 R_Free 0.252
crystal cell	length a length b length c angle alpha angle beta angle gamma 61.633 109.365 43.364 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	2.61 Å
ligand	CA, NAG	enzyme
related structures	by homologous chain: 1Y1F
Primary reference	Molecular basis for multiple sulfatase deficiency and mechanism for formylglycine generation of the human formylglycine-generating enzyme., Dierks T, Dickmanns A, Preusser-Kunze A, Schmidt B, Mariappan M, von Figura K, Ficner R, Rudolph MG, Cell. 2005 May 20;121(4):541-52. PMID:15907468

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (55 Kb) [Save to disk] Biological Unit Coordinates (1y1i.pdb1.gz) 50 Kb LPC: Ligand-Protein Contacts for 1Y1I CSU: Contacts of Structural Units for 1Y1I Likely Quarternary Molecular Structure file(s) for 1Y1I Structure Factors (138 Kb) Retrieve 1Y1I in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 1Y1I from S2C, [Save to disk] Re-refined 1y1i structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 1Y1I in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz. On AstexViewer, from MSD-EBI (viewer documentation). On RasMol (Install RasMol freeware) Here's help on how to use RasMol.

Visual 3D analysis of 1Y1I

Cartoon representation from PDB Cartoon Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute Crystal Contacts, from CryCo at Weizmann Institute 3D motif for 1Y1I, from MSDmotif at EBI Fold representative 1y1i from FSSP and Dali (Families of Structurally Similar Proteins)

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [1y1i_X] SWISS-PROT database: [Q8NBK3] Domain organization of [SUMF1_HUMAN] by SWISSPFAM Alignments of the sequence of 1Y1I with the sequences similar proteins can be viewed for 1Y1I's classification [SUMF1_HUMAN] at ProtoMap. Click on "Neighbors List", then on the "See Alignments" button below the list. A sequence distance tree ("phylogenetic tree") can be viewed for 1ACL's classification [SUMF1_HUMAN] at ProtoMap. Click on the Cluster number.

Other resources with information on 1Y1I

Community annotation for 1Y1I at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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