1Y2O	Signaling Protein	date	Nov 23, 2004
title	Structure Of N-Terminal Domain Irsp53baiap2
authors	T.H.Millard, G.Bompard, M.Y.Heung, T.R.Dafforn, D.J.Scott, L.M.Machesky, K.Futterer
compound		source
Molecule: Bai1-Associated Protein 2 Isoform 1 Chain: A, B Fragment: N-Terminal Domain Synonym: Baiap2 Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_strain: B834(De3) Expression_system_vector_type: Plasmid Expression_system_plasmid: Pgex2t
symmetry	Space Group: P 1 21 1	R_factor 0.228 R_Free 0.267
crystal cell	length a length b length c angle alpha angle beta angle gamma 49.879 64.164 74.586 90.00 106.18 90.00
method	X-Ray Diffraction	resolution	2.20 Å
ligand	MSE	enzyme
related structures	by homologous chain: 1WDZ
Gene Ontology	Chain Function Process Component A, B
Primary reference	Structural basis of filopodia formation induced by the IRSp53/MIM homology domain of human IRSp53., Millard TH, Bompard G, Heung MY, Dafforn TR, Scott DJ, Machesky LM, Futterer K, EMBO J 2005 Jan 26;24(2):240-50. Epub 2005 Jan 06. PMID:15635447

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (89 Kb) [Save to disk] Biological Unit Coordinates (1y2o.pdb1.gz) 84 Kb LPC: Ligand-Protein Contacts for 1Y2O CSU: Contacts of Structural Units for 1Y2O Likely Quarternary Molecular Structure file(s) for 1Y2O Retrieve 1Y2O in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 1Y2O from S2C, [Save to disk]

View 1Y2O in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 1Y2O

Ramachandran plot from PDBSum

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 1Y2O, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [1y2o_A] [1y2o] [1y2o_B] SWISS-PROT database: [Q9UQB8] Domain organization of [BAIP2_HUMAN] by SWISSPFAM

Other resources with information on 1Y2O

Community annotation for 1Y2O at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

Movements, Movies and Images

Images from IMB Jena Image Library of Biological Macromolecules.

You may enter another PDB ID code

Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]

---

OCA© by Jaime Prilusky, 1996-2014,2022 Bioinformatics Unit Weizmann Institute of Science

---