OCA Atlas for 1Y3A

1Y3A

date

authors

compound

source

symmetry

R_factor

R_Free

crystal
cell

length a	length b	length c	angle alpha	angle beta	angle gamma

method

X-Ray Diffraction

resolution

ligand

GDP

enzyme

Gene
Ontology

Chain	Function	Process	Component
A, B, C, D

Primary reference

Structure of Galpha(i1) Bound to a GDP-Selective Peptide Provides Insight into Guanine Nucleotide Exchange., Johnston CA, Willard FS, Jezyk MR, Fredericks Z, Bodor ET, Jones MB, Blaesius R, Watts VJ, Harden TK, Sondek J, Ramer JK, Siderovski DP, Structure (Camb) 2005 Jul;13(7):1069-80. PMID:16004878

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (213 Kb) [Save to disk]

Biological Unit Coordinates (1y3a.pdb1.gz) 54 Kb

Biological Unit Coordinates (1y3a.pdb2.gz) 55 Kb

Biological Unit Coordinates (1y3a.pdb3.gz) 54 Kb

Biological Unit Coordinates (1y3a.pdb4.gz) 55 Kb

LPC: Ligand-Protein Contacts for 1Y3A

CSU: Contacts of Structural Units for 1Y3A

Likely Quarternary Molecular Structure file(s) for 1Y3A

Structure Factors (764 Kb)

Retrieve 1Y3A in mmCIF format [Save to disk]

SEQRES to COORDINATES correlation for 1Y3A from S2C, [Save to disk]

Re-refined 1y3a structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 1Y3A in 3D

Proteopedia, because life has more than 2D.

On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.

On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [1y3a] [1y3a_A] [1y3a_B] [1y3a_C] [1y3a_D] [1y3a_E] [1y3a_F] [1y3a_G] [1y3a_H]

SWISS-PROT database: [P63096]

Domain found in 1Y3A: [G_alpha ] by SMART

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