1Y4O Contractile Protein date Dec 01, 2004
title Solution Structure Of A Mouse Cytoplasmic Roadblocklc7 Dyne Chain
authors J.Song, R.C.Tyler, M.S.Lee, E.M.Tyler, J.L.Markley, Center For Eu Structural Genomics (Cesg)
compound source
Molecule: Dynein Light Chain 2a, Cytoplasmic
Chain: A, B
Engineered: Yes
 Organism_scientific: Mus Musculus
Organism_common: House Mouse
Organism_taxid: 10090
Gene: Dncl2a
Expression_system: Cell-Free Synthesis
Other_details: Wheat Germ Cell-Free, In Vitro Expression
methodSolution NMR
related structures by homologous chain: 1TGQ
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceSolution structure of isoform 1 of Roadblock/LC7, a light chain in the dynein complex., Song J, Tyler RC, Lee MS, Tyler EM, Markley JL, J Mol Biol. 2005 Dec 16;354(5):1043-51. Epub 2005 Nov 2. PMID:16289575
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (1131 Kb) [Save to disk]
  • Biological Unit Coordinates (1y4o.pdb1.gz) 56 Kb
  • CSU: Contacts of Structural Units for 1Y4O
  • Original NMR restraints for 1Y4O from PDB
  • Experimental data, such as chemical shifts, at BioMagResBank (BMRB)
  • NMR Restraints Grid from BioMagResBank (BMRB)
  • Retrieve 1Y4O in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1Y4O from S2C, [Save to disk]
    • View 1Y4O in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 1Y4O
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1Y4O, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1y4o_B] [1y4o_A] [1y4o]
  • SWISS-PROT database: [P62627]
  • Domain organization of [DLRB1_MOUSE] by SWISSPFAM
  • Domain found in 1Y4O: [Robl_LC7 ] by SMART
    • Other resources with information on 1Y4O
  • Community annotation for 1Y4O at PDBWiki (http://pdbwiki.org)
  • NMR Ensemble (OLDERADO: core, domain and representative structure database)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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