1Y5E Biosynthetic Protein date Dec 02, 2004
title Crystal Structure Of Molybdenum Cofactor Biosynthesis Protein B
authors C.Chang, M.Zhou, J.Abdullah, A.Joachimiak, Midwest Center For Structural Genomics (Mcsg)
compound source
Molecule: Molybdenum Cofactor Biosynthesis Protein B
Chain: A, B, C
Engineered: Yes
 Organism_scientific: Bacillus Cereus
Organism_taxid: 1396
Gene: Moab
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: B834(De3)
Expression_system_vector: Plasmid
Expression_system_plasmid: Pmcsg7
symmetry Space Group: P 31 2 1
R_factor 0.188 R_Free 0.215
crystal
cell
length a length b length c angle alpha angle beta angle gamma
122.952 122.952 74.536 90.00 90.00 120.00
method X-Ray Diffractionresolution 1.90 Å
ligand IMD, MPD, MSE enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, C, B


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (88 Kb) [Save to disk]
  • Biological Unit Coordinates (1y5e.pdb1.gz) 83 Kb
  • Biological Unit Coordinates (1y5e.pdb2.gz) 164 Kb
  • LPC: Ligand-Protein Contacts for 1Y5E
  • CSU: Contacts of Structural Units for 1Y5E
  • Likely Quarternary Molecular Structure file(s) for 1Y5E
  • Structure Factors (782 Kb)
  • Retrieve 1Y5E in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1Y5E from S2C, [Save to disk]
  • Re-refined 1y5e structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 1Y5E in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 1Y5E
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1Y5E, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1y5e] [1y5e_C] [1y5e_B] [1y5e_A]
  • SWISS-PROT database: [Q816R0]
  • Domain organization of [MOAB_BACCR] by SWISSPFAM
  • Domain found in 1Y5E: [MoCF_biosynth ] by SMART
    • Other resources with information on 1Y5E
  • Community annotation for 1Y5E at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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