1Y61 Blood Clotting date Dec 03, 2004
title Coagulation Factor Va Model
authors T.Orban, M.Kalafatis, V.Gogonea
compound source
Molecule: Coagulation Factor Va Heavy Chain
Chain: H
Synonym: Activated Protein C Cofactor
Organism_scientific: Homo Sapiens
Organism_common: Human

Molecule: Coagulation Factor Va Light Chain
Chain: L
Synonym: Activated Protein C Cofactor

Organism_scientific: Homo Sapiens
Organism_common: Human
methodTheoretical Model
Primary referenceCompleted three-dimensional model of human coagulation factor va. Molecular dynamics simulations and structural analyses., Orban T, Kalafatis M, Gogonea V, Biochemistry. 2005 Oct 4;44(39):13082-90. PMID:16185076
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (193 Kb) [Save to disk]
  • CSU: Contacts of Structural Units for 1Y61
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  • Visual 3D analysis of 1Y61
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Fold representative 1y61 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • SWISS-PROT database: [P12259]
  • Domain organization of [FA5_HUMAN] by SWISSPFAM
  • Alignments of the sequence of 1Y61 with the sequences similar proteins can be viewed for 1Y61's classification [FA5_HUMAN] at ProtoMap. Click on "Neighbors List", then on the "See Alignments" button below the list.
  • A sequence distance tree ("phylogenetic tree") can be viewed for 1ACL's classification [FA5_HUMAN] at ProtoMap. Click on the Cluster number.
  • Other resources with information on 1Y61
  • Community annotation for 1Y61 at PDBWiki (http://pdbwiki.org)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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