1Y63	Structural Genomics, Unknown Function	date	Dec 03, 2004
title	Initial Crystal Structural Analysis Of A Probable Kinase Fro Leishmania Major Friedlin
authors	M.A.Robien, W.G.J.Hol, Structural Genomics Of Pathogenic Proto Consortium (Sgpp)
compound		source
Molecule: Lmaj004144aaa Protein Chain: A Engineered: Yes		Organism_scientific: Leishmania Major Organism_taxid: 347515 Strain: Friedlin Gene: Lmjf30.1890 Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_strain: Bl21starde3 Expression_system_vector_type: Plasmid Expression_system_plasmid: Pet14b Other_details: T7 System
symmetry	Space Group: P 4 21 2	R_factor 0.165 R_Free 0.196
crystal cell	length a length b length c angle alpha angle beta angle gamma 107.116 107.116 35.216 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	1.70 Å
ligand	ADP, BR, MN, NA	enzyme
note	1Y63 is a representative structure
Gene Ontology	Chain Function Process Component A adenylate kinase activity

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (40 Kb) [Save to disk] Biological Unit Coordinates (1y63.pdb1.gz) 33 Kb LPC: Ligand-Protein Contacts for 1Y63 CSU: Contacts of Structural Units for 1Y63 Likely Quarternary Molecular Structure file(s) for 1Y63 Structure Factors (927 Kb) Retrieve 1Y63 in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 1Y63 from S2C, [Save to disk] Re-refined 1y63 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 1Y63 in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 1Y63

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 1Y63, from MSDmotif at EBI Classification of representative domains in scop (Structural Classification of Proteins)     - Domain d1y63a_, region A [Jmol] [rasmolscript] [script source]

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [1y63] [1y63_A] SWISS-PROT database: [Q4Q7A6] Domain organization of [Q4Q7A6_LEIMA] by SWISSPFAM

Other resources with information on 1Y63

Community annotation for 1Y63 at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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