1Y96 Rna Binding Protein date Dec 14, 2004
title Crystal Structure Of The Gemin6gemin7 Heterodimer From The Human Smn Complex
authors Y.Ma, J.Dostie, G.Dreyfuss, G.D.Van Duyne
compound source
Molecule: Gem-Associated Protein 6
Chain: A, C
Fragment: Gemin6(1-86)
Synonym: Gemin6, Sip2
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Gemin6
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_strain: Bl21 (De3)
Expression_system_plasmid: Pgv67

Molecule: Gem-Associated Protein 7
Chain: B, D
Fragment: Gemin7(47-131)
Synonym: Gemin7, Sip3
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Gemin7
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_strain: Bl21 (De3)
Expression_system_plasmid: Pet24d
symmetry Space Group: P 42 21 2
R_factor 0.217 R_Free 0.252
crystal
cell
length a length b length c angle alpha angle beta angle gamma
136.011 136.011 81.515 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.00 Å
Gene
Ontology
ChainFunctionProcessComponent
A, C


D, B


Primary referenceThe Gemin6-Gemin7 Heterodimer from the Survival of Motor Neurons Complex Has an Sm Protein-like Structure., Ma Y, Dostie J, Dreyfuss G, Van Duyne GD, Structure (Camb) 2005 Jun;13(6):883-92. PMID:15939020
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (61 Kb) [Save to disk]
  • Biological Unit Coordinates (1y96.pdb1.gz) 29 Kb
  • Biological Unit Coordinates (1y96.pdb2.gz) 29 Kb
  • CSU: Contacts of Structural Units for 1Y96
  • Likely Quarternary Molecular Structure file(s) for 1Y96
  • Structure Factors (429 Kb)
  • Retrieve 1Y96 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1Y96 from S2C, [Save to disk]
  • Re-refined 1y96 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1Y96 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1Y96
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 1Y96, from MSDmotif at EBI
  • Fold representative 1y96 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1y96] [1y96_D] [1y96_B] [1y96_C] [1y96_A]
  • SWISS-PROT database: [Q8WXD5] [Q9H840]
  • Domain organization of [GEMI6_HUMAN] [GEMI7_HUMAN] by SWISSPFAM
  • Other resources with information on 1Y96
  • Community annotation for 1Y96 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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