1Y9A Oxidoreductase date Dec 15, 2004
title Alcohol Dehydrogenase From Entamoeba Histolotica In Complex Cacodylate
authors L.J.Shimon, M.Peretz, E.Goihberg, Y.Burstein, F.Frolow
compound source
Molecule: Nadp-Dependent Alcohol Dehydrogenase
Chain: A, C
Ec: 1.1.1.2
Engineered: Yes
Organism_scientific: Entamoeba Histolytica
Organism_taxid: 5759
Gene: Adh1
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Tg-I
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Bs-P58
symmetry Space Group: C 2 2 21
R_factor 0.126 R_Free 0.177
crystal
cell
length a length b length c angle alpha angle beta angle gamma
76.891 234.139 96.241 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.81 Å
ligand ACT, CAC, EDO, MG, OHS, ZN enzyme Oxidoreductase E.C.1.1.1.2 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, C


Primary referenceStructure of alcohol dehydrogenase from Entamoeba histolytica., Shimon LJ, Goihberg E, Peretz M, Burstein Y, Frolow F, Acta Crystallogr D Biol Crystallogr. 2006 May;62(Pt 5):541-7. Epub 2006, Apr 19. PMID:16627948
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (258 Kb) [Save to disk]
  • Biological Unit Coordinates (1y9a.pdb1.gz) 499 Kb
  • LPC: Ligand-Protein Contacts for 1Y9A
  • CSU: Contacts of Structural Units for 1Y9A
  • Likely Quarternary Molecular Structure file(s) for 1Y9A
  • Structure Factors (604 Kb)
  • Retrieve 1Y9A in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1Y9A from S2C, [Save to disk]
  • Re-refined 1y9a structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1Y9A in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1Y9A
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 1Y9A, from MSDmotif at EBI
  • Fold representative 1y9a from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1y9a_A] [1y9a_C] [1y9a]
  • SWISS-PROT database: [P35630]
  • Domain organization of [ADH1_ENTHI] by SWISSPFAM
  • Other resources with information on 1Y9A
  • Community annotation for 1Y9A at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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