1Y9E	Structural Genomics, Unknown Function	date	Dec 15, 2004
title	Crystal Structure Of Bacillus Subtilis Protein Yhfp With Nad
authors	T.Min, J.Gorman, L.Shapiro, S.K.Burley, New York Sgx Research Ce Structural Genomics (Nysgxrc)
compound		source
Molecule: Hypothetical Protein Yhfp Chain: A, B, C, D, E, F Engineered: Yes		Organism_scientific: Bacillus Subtilis Organism_taxid: 1423 Gene: Yhfp Expression_system: Escherichia Coli Bl21(De3) Expression_system_taxid: 469008 Expression_system_strain: Bl21de3 Expression_system_vector_type: Plasmid Expression_system_plasmid: Pet26b
symmetry	Space Group: P 21 21 21	R_factor 0.227 R_Free 0.233
crystal cell	length a length b length c angle alpha angle beta angle gamma 103.271 136.922 167.135 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	2.80 Å
ligand	MSE, NAD	enzyme
related structures	by homologous chain: 1XA0
Gene Ontology	Chain Function Process Component F, A, D, C, E, B

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (269 Kb) [Save to disk] Biological Unit Coordinates (1y9e.pdb1.gz) 253 Kb LPC: Ligand-Protein Contacts for 1Y9E CSU: Contacts of Structural Units for 1Y9E Likely Quarternary Molecular Structure file(s) for 1Y9E Structure Factors (1059 Kb) Retrieve 1Y9E in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 1Y9E from S2C, [Save to disk] Re-refined 1y9e structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 1Y9E in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 1Y9E

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 1Y9E, from MSDmotif at EBI Classification of representative domains in scop (Structural Classification of Proteins)     - Domain d1y9ea2, region A:128-294 [Jmol] [rasmolscript] [script source]     - Domain d1y9ea1, region A:2-127,A:295-330 [Jmol] [rasmolscript] [script source]     - Domain d1y9eb2, region B:128-294 [Jmol] [rasmolscript] [script source]     - Domain d1y9eb1, region B:2-127,B:295-330 [Jmol] [rasmolscript] [script source]     - Domain d1y9ec2, region C:128-294 [Jmol] [rasmolscript] [script source]     - Domain d1y9ec1, region C:2-127,C:295-330 [Jmol] [rasmolscript] [script source]     - Domain d1y9ed2, region D:128-294 [Jmol] [rasmolscript] [script source]     - Domain d1y9ed1, region D:2-127,D:295-330 [Jmol] [rasmolscript] [script source]     - Domain d1y9ee2, region E:128-294 [Jmol] [rasmolscript] [script source]     - Domain d1y9ee1, region E:2-127,E:295-330 [Jmol] [rasmolscript] [script source]     - Domain d1y9ef2, region F:128-294 [Jmol] [rasmolscript] [script source]     - Domain d1y9ef1, region F:2-127,F:295-330 [Jmol] [rasmolscript] [script source]

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [1y9e_A] [1y9e_E] [1y9e_F] [1y9e_B] [1y9e_C] [1y9e_D] [1y9e] SWISS-PROT database: [O07615] Domain organization of [YHFP_BACSU] by SWISSPFAM

Other resources with information on 1Y9E

Community annotation for 1Y9E at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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