1Y9R	Transcription, Ligand Binding Protein	date	Dec 16, 2004
title	Crystal Structure Of The Human Mineralocorticoid Receptor Li Binding Domain Bound To Deoxycorticosterone And Harboring T Mutation Responsible For A Severe Form Of Hypertension
authors	J.Fagart, J.Huyet, G.M.Pinon, M.Rochel, C.Mayer, M.E.Rafestin-Obl
compound		source
Molecule: Mineralocorticoid Receptor Chain: A, B Fragment: Ligand-Binding Domain Synonym: Mr; Nuclear Receptor Subfamily 3, Group C, Member Engineered: Yes Mutation: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Cell_line: Uv20hl21-27 Gene: Nr3c2, Mcr, Mlr Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_strain: Bl21 Codon Plus (De3) Ril Expression_system_cellular_location: Cytoplasm Expression_system_vector_type: Pgex Expression_system_plasmid: Pmrlbdl810
symmetry	Space Group: P 31	R_factor 0.229 R_Free 0.267
crystal cell	length a length b length c angle alpha angle beta angle gamma 120.284 120.284 41.326 90.00 90.00 120.00
method	X-Ray Diffraction	resolution	1.96 Å
ligand	1CA	enzyme
related structures	by homologous chain: 1YA3
Primary reference	Crystal structure of a mutant mineralocorticoid receptor responsible for hypertension., Fagart J, Huyet J, Pinon GM, Rochel M, Mayer C, Rafestin-Oblin ME, Nat Struct Mol Biol 2005 Jun;12(6):554-5. Epub 2005 May 22. PMID:15908963

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (92 Kb) [Save to disk] Biological Unit Coordinates (1y9r.pdb1.gz) 45 Kb Biological Unit Coordinates (1y9r.pdb2.gz) 44 Kb LPC: Ligand-Protein Contacts for 1Y9R CSU: Contacts of Structural Units for 1Y9R Likely Quarternary Molecular Structure file(s) for 1Y9R Structure Factors (448 Kb) Retrieve 1Y9R in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 1Y9R from S2C, [Save to disk] Re-refined 1y9r structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 1Y9R in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 1Y9R

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 1Y9R, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [1y9r_B] [1y9r_A] [1y9r] SWISS-PROT database: [P08235] Domain organization of [MCR_HUMAN] by SWISSPFAM Domain found in 1Y9R: [HOLI ] by SMART

Other resources with information on 1Y9R

Community annotation for 1Y9R at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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