1YA8 Crystal Structure of Human Liver Carboxylesterase in complex with cleavage products of Mevastatin date
authors Fleming, C.D., Bencharit, S., Edwards, C.C., Hyatt, J.L., Morton, C.L., Howard-Williams, E.L., Potter, P.M., Redinbo, M.R.
compound source
symmetry
R_factor
R_Free 0.247
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 3.00
ligand MVB, NAG, SIA, SMB, SO4 enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, C, B
  • cholesterol ester hydrolysis...

  • Primary referenceStructural insights into drug processing by human carboxylesterase 1: tamoxifen, mevastatin, and inhibition by benzil., Fleming CD, Bencharit S, Edwards CC, Hyatt JL, Tsurkan L, Bai F, Fraga C, Morton CL, Howard-Williams EL, Potter PM, Redinbo MR, J Mol Biol 2005 Sep 9;352(1):165-77. PMID:16081098
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (263 Kb) [Save to disk]
  • Biological Unit Coordinates (1ya8.pdb1.gz) 256 Kb
  • LPC: Ligand-Protein Contacts for 1YA8
  • CSU: Contacts of Structural Units for 1YA8
  • Likely Quarternary Molecular Structure file(s) for 1YA8
  • Structure Factors (361 Kb)
  • Retrieve 1YA8 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1YA8 from S2C, [Save to disk]
  • Re-refined 1ya8 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1YA8 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1YA8
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1YA8, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1ya8_C] [1ya8_A] [1ya8_B] [1ya8]
  • SWISS-PROT database: [P23141]
  • Domain organization of [EST1_HUMAN] by SWISSPFAM
  • Other resources with information on 1YA8
  • Community annotation for 1YA8 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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