1YA9 Lipid Transport date Dec 17, 2004
title Crystal Structure Of The 22kda N-Terminal Fragment Of Mouse Apolipoprotein E
authors C.A.Peters-Libeu, E.Rutenber, Y.Newhouse, D.M.Hatters, K.H.Weisg
compound source
Molecule: Apolipoprotein E
Chain: A
Synonym: Apo-E
Engineered: Yes
Organism_scientific: Mus Musculus
Organism_common: House Mouse
Organism_taxid: 10090
Gene: Apoe
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 21 21 21
R_factor 0.215 R_Free 0.224
crystal
cell
length a length b length c angle alpha angle beta angle gamma
29.034 49.233 112.177 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.09 Å
related structures by homologous chain: 1LPE, 1NFO
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceEngineering confromational destabilization into mouse apolipoprotein E: A model for a unique property of human apolipoprotein E4., Hatters DM, Peters-Libeu CA, Weisgraber KH, J Biol Chem 2005 May 11;. PMID:15890642
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (33 Kb) [Save to disk]
  • Biological Unit Coordinates (1ya9.pdb1.gz) 29 Kb
  • CSU: Contacts of Structural Units for 1YA9
  • Likely Quarternary Molecular Structure file(s) for 1YA9
  • Retrieve 1YA9 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1YA9 from S2C, [Save to disk]
  • View 1YA9 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1YA9
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1YA9, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1ya9_A] [1ya9]
  • SWISS-PROT database: [P08226]
  • Domain organization of [APOE_MOUSE] by SWISSPFAM
  • Other resources with information on 1YA9
  • Community annotation for 1YA9 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

  • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014,2022
    Bioinformatics Unit
    Weizmann Institute of Science