1YAK date
authors
compound source
symmetry
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution
ligand HMH enzyme
related structures by homologous chain: 1TO9, 1TYH
Gene
Ontology
ChainFunctionProcessComponent
B, D, C, A


Primary referenceStructural characterization of the regulatory proteins TenA and TenI from Bacillus subtilis and identification of TenA as a thiaminase II., Toms AV, Haas AL, Park JH, Begley TP, Ealick SE, Biochemistry. 2005 Feb 22;44(7):2319-29. PMID:15709744
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (144 Kb) [Save to disk]
  • Biological Unit Coordinates (1yak.pdb1.gz) 137 Kb
  • Biological Unit Coordinates (1yak.pdb2.gz) 138 Kb
  • LPC: Ligand-Protein Contacts for 1YAK
  • CSU: Contacts of Structural Units for 1YAK
  • Likely Quarternary Molecular Structure file(s) for 1YAK
  • Structure Factors (283 Kb)
  • Retrieve 1YAK in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1YAK from S2C, [Save to disk]
  • Re-refined 1yak structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1YAK in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1yak] [1yak_A] [1yak_B] [1yak_C] [1yak_D]
  • SWISS-PROT database: [P25052]

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