OCA Atlas for 1YAR

1YAR

date

authors

compound

source

symmetry

R_factor

R_Free

crystal
cell

length a	length b	length c	angle alpha	angle beta	angle gamma

method

X-Ray Diffraction

resolution

ligand

GOL, SO4

enzyme

Gene
Ontology

Chain	Function	Process	Component
G, C, A, E, F, D, B
K, L, M, H, N, J, I
O, Q, U, S, P, R, T

Primary reference

The 1.9 A structure of a proteasome-11S activator complex and implications for proteasome-PAN/PA700 interactions., Forster A, Masters EI, Whitby FG, Robinson H, Hill CP, Mol Cell 2005 May 27;18(5):589-99. PMID:15916965

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (784 Kb) [Save to disk]

Biological Unit Coordinates (1yar.pdb1.gz) 1545 Kb

LPC: Ligand-Protein Contacts for 1YAR

CSU: Contacts of Structural Units for 1YAR

Likely Quarternary Molecular Structure file(s) for 1YAR

Structure Factors (7001 Kb)

Retrieve 1YAR in mmCIF format [Save to disk]

SEQRES to COORDINATES correlation for 1YAR from S2C, [Save to disk]

Re-refined 1yar structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 1YAR in 3D

Proteopedia, because life has more than 2D.

On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.

On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [1yar_R] [1yar_S] [1yar_T] [1yar_U] [1yar] [1yar_A] [1yar_B] [1yar_C] [1yar_D] [1yar_E] [1yar_F] [1yar_G] [1yar_H] [1yar_I] [1yar_J] [1yar_K] [1yar_L] [1yar_M] [1yar_N] [1yar_O] [1yar_P] [1yar_Q]

SWISS-PROT database: [P25156] [P28061] [Q9U8G2]

Domain found in 1YAR: [Proteasome_A_N ] by SMART

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