1YBJ date
authors
compound source
symmetry
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffraction, 10 Modelsresolution
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceComparative analysis of structural and dynamic properties of the loaded and unloaded hemophore HasA: functional implications., Wolff N, Izadi-Pruneyre N, Couprie J, Habeck M, Linge J, Rieping W, Wandersman C, Nilges M, Delepierre M, Lecroisey A, J Mol Biol. 2008 Feb 15;376(2):517-25. Epub 2007 Dec 4. PMID:18164722
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (403 Kb) [Save to disk]
  • Biological Unit Coordinates (1ybj.pdb1.gz) 41 Kb
  • CSU: Contacts of Structural Units for 1YBJ
  • Experimental data, such as chemical shifts, at BioMagResBank (BMRB)
  • NMR Restraints Grid from BioMagResBank (BMRB)
  • Retrieve 1YBJ in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1YBJ from S2C, [Save to disk]
    • View 1YBJ in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1ybj] [1ybj_A]
  • SWISS-PROT database: [Q54450]
  • Belongs to the outer membrane receptor (omr) family according to TCDB.

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