OCA Atlas for 1YC6

1YC6

date

authors

compound

source

symmetry

R_factor

R_Free

crystal
cell

length a	length b	length c	angle alpha	angle beta	angle gamma

method

X-Ray Diffraction

resolution

note

1YC6 is a representative structure

Gene
Ontology

Chain	Function	Process	Component
Z, H, X, D, 4, A, 3, O, Q, F, S, G, L, U, 1, E, W, 2, C, B, Y, J, I, R, N, K, V, T, M, P

Primary reference

Crystallographic structure of the T=1 particle of brome mosaic virus., Larson SB, Lucas RW, McPherson A, J Mol Biol. 2005 Feb 25;346(3):815-31. Epub 2005 Jan 12. PMID:15713465

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (703 Kb) [Save to disk]

Biological Unit Coordinates (1yc6.pdb1.gz) 1393 Kb

CSU: Contacts of Structural Units for 1YC6

Likely Quarternary Molecular Structure file(s) for 1YC6

Structure Factors (2423 Kb)

Retrieve 1YC6 in mmCIF format [Save to disk]

SEQRES to COORDINATES correlation for 1YC6 from S2C, [Save to disk]

Re-refined 1yc6 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 1YC6 in 3D

Proteopedia, because life has more than 2D.

On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.

On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [1yc6] [1yc6_1] [1yc6_2] [1yc6_3] [1yc6_4] [1yc6_A] [1yc6_B] [1yc6_C] [1yc6_D] [1yc6_E] [1yc6_F] [1yc6_G] [1yc6_H] [1yc6_I] [1yc6_J] [1yc6_K] [1yc6_L] [1yc6_M] [1yc6_N] [1yc6_O] [1yc6_P] [1yc6_Q] [1yc6_R] [1yc6_S] [1yc6_T] [1yc6_U] [1yc6_V] [1yc6_W] [1yc6_X] [1yc6_Y] [1yc6_Z]

SWISS-PROT database: [P03602]

Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]