1YC9 Membrane Protein date Dec 22, 2004
title The Crystal Structure Of The Outer Membrane Protein Vcec Fro Bacterial Pathogen Vibrio Cholerae At 1.8 Resolution
authors L.Federici, D.Du, F.Walas, H.Matsumura, J.Fernandez-Recio, K.S.Mc M.I.Borges-Walmsley, B.F.Luisi, A.R.Walmsley
compound source
Molecule: Multidrug Resistance Protein
Chain: A
Synonym: Vcec
Engineered: Yes
Mutation: Yes
 Organism_scientific: Vibrio Cholerae
Organism_taxid: 666
Strain: Cvd101
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 3 2 1
R_factor 0.189 R_Free 0.221
crystal
cell
length a length b length c angle alpha angle beta angle gamma
71.458 71.458 190.702 90.00 90.00 120.00
method X-Ray Diffractionresolution 1.80 Å
ligand BOG, HG enzyme
Gene
Ontology
ChainFunctionProcessComponent
A
  • xenobiotic transmembrane tra...


    • Primary referenceThe crystal structure of the outer membrane protein VCEC from the bacterial pathogen vibrio cholerae at 1.8 A resolution., Federici L, Du D, Walas F, Matsumura H, Fernandez-Recio J, McKeegan KS, Borges-Walmsley MI, Luisi BF, Walmsley AR, J Biol Chem 2005 Jan 31;. PMID:15684414
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (76 Kb) [Save to disk]
  • Biological Unit Coordinates (1yc9.pdb1.gz) 205 Kb
  • LPC: Ligand-Protein Contacts for 1YC9
  • CSU: Contacts of Structural Units for 1YC9
  • Likely Quarternary Molecular Structure file(s) for 1YC9
  • Structure Factors (386 Kb)
  • Retrieve 1YC9 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1YC9 from S2C, [Save to disk]
  • Re-refined 1yc9 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 1YC9 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 1YC9
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1YC9, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1yc9] [1yc9_A]
  • SWISS-PROT database: [Q9KS51]
  • Domain organization of [Q9KS51_VIBCH] by SWISSPFAM
    • Other resources with information on 1YC9
  • Community annotation for 1YC9 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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