1YCS Complex (Anti-Oncogene Ankyrin Repeats) date Sep 30, 1996
title P53-53bp2 Complex
authors S.Gorina, N.P.Pavletich
compound source
Molecule: P53
Chain: A
Fragment: Residues 97 - 287
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Cell_line: Bl21
Gene: Residues 291-529
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl21 (D3)
Expression_system_plasmid: Pet3d
Expression_system_gene: Residues 94-292

Molecule: 53bp2
Chain: B
Fragment: Residues 327 - 519
Synonym: P53bp2
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Cell_line: Bl21
Gene: Residues 291-529
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl21 (D3)
Expression_system_plasmid: Pgex-3x, Gst Fusion
Expression_system_gene: Residues 291-529
Other_details: The Fragment Used In The Crystallization (Residues 291-519) Was Produced By The Cleavage Of Factor Xa From Gst-Fusion Protein
symmetry Space Group: P 21 21 21
R_factor 0.205 R_Free 0.286
crystal
cell
length a length b length c angle alpha angle beta angle gamma
68.800 72.800 119.000 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.20 Å
ligand ZN enzyme
related structures by homologous chain: 1TSR, 1TUP
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceStructure of the p53 tumor suppressor bound to the ankyrin and SH3 domains of 53BP2., Gorina S, Pavletich NP, Science 1996 Nov 8;274(5289):1001-5. PMID:8875926
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (72 Kb) [Save to disk]
  • Biological Unit Coordinates (1ycs.pdb1.gz) 68 Kb
  • LPC: Ligand-Protein Contacts for 1YCS
  • CSU: Contacts of Structural Units for 1YCS
  • Likely Quarternary Molecular Structure file(s) for 1YCS
  • Retrieve 1YCS in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1YCS from S2C, [Save to disk]
  • View 1YCS in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1YCS
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 1YCS, from MSDmotif at EBI
  • Genome occurence of 1YCS's fold from GeneCensus
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1ycsa_, region A [Jmol] [rasmolscript] [script source]
        - Domain d1ycsb1, region B:327-456 [Jmol] [rasmolscript] [script source]
        - Domain d1ycsb2, region B:457-519 [Jmol] [rasmolscript] [script source]
  • Fold representative 1ycs from FSSP and Dali (Families of Structurally Similar Proteins)
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1ycs] [1ycs_A] [1ycs_B]
  • SWISS-PROT database: [Q13625] [P04637]
  • Belongs to the pore-forming pnc-27 peptide of 32 aas from the p53 tumor suppressor protein (pnc-27) family according to TCDB.
  • Domain organization of [ASPP2_HUMAN] [P53_HUMAN] by SWISSPFAM
  • Domains found in 1YCS: [ANK] [SH3 ] by SMART
  • Other resources with information on 1YCS
  • Community annotation for 1YCS at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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