1YCY Conserved hypothetical protein Pfu-1806301-001 from Pyrococcus furiosus date
authors Huang, L., Liu, Z.J., Lee, D., Tempel, W., Chang, J., Zhao, M., Habel, J., Xu, H., Chen, L., Nguyen, D., Chang, S.H., Horanyi, P., Florence, Q., Zhou, W., Lin, D., Zhang, H., Praissman, J., Jenney, F.E., Adams, M.W.W., Rose, J.P., Wang, B.C., SECSG, Southeast.Collaboratory.for.Structural.Genomics.
compound source
symmetry
R_factor
R_Free 0.311
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 2.80
ligand MSE enzyme
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (43 Kb) [Save to disk]
  • Biological Unit Coordinates (1ycy.pdb1.gz) 144 Kb
  • Biological Unit Coordinates (1ycy.pdb2.gz) 73 Kb
  • LPC: Ligand-Protein Contacts for 1YCY
  • CSU: Contacts of Structural Units for 1YCY
  • Likely Quarternary Molecular Structure file(s) for 1YCY
  • Structure Factors (82 Kb)
  • Retrieve 1YCY in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1YCY from S2C, [Save to disk]
  • Re-refined 1ycy structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1YCY in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1YCY
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1YCY, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1ycy] [1ycy_B] [1ycy_C] [1ycy_D] [1ycy_A]
  • SWISS-PROT database: [Q8TZN2]
  • Domain organization of [Q8TZN2_PYRFU] by SWISSPFAM
  • Other resources with information on 1YCY
  • Community annotation for 1YCY at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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