1YD3		date
authors
compound		source
symmetry		R_factor R_Free
crystal cell	length a length b length c angle alpha angle beta angle gamma
method	X-Ray Diffraction	resolution
ligand	GOL, MN	enzyme
note	1YD3 is a representative structure
related structures	by homologous chain: 1YD1, 1YD2
Primary reference	Structural insights into the first incision reaction during nucleotide excision repair., Truglio JJ, Rhau B, Croteau DL, Wang L, Skorvaga M, Karakas E, Dellavecchia MJ, Wang H, Van Houten B, Kisker C, EMBO J 2005 Feb 3;. PMID:15692561

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (42 Kb) [Save to disk] Biological Unit Coordinates (1yd3.pdb1.gz) 37 Kb LPC: Ligand-Protein Contacts for 1YD3 CSU: Contacts of Structural Units for 1YD3 Likely Quarternary Molecular Structure file(s) for 1YD3 Structure Factors (157 Kb) Retrieve 1YD3 in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 1YD3 from S2C, [Save to disk] Re-refined 1yd3 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 1YD3 in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [1yd3] [1yd3_A] SWISS-PROT database: [Q9WYA3] Domain found in 1YD3: [GIYc ] by SMART

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