1YD7	Oxidoreductase	date	Dec 23, 2004
title	Conserved Hypothetical Protein Pfu-1647980-001 From Pyrococc Furiosus
authors	P.Horanyi, Q.Florence, W.Zhou, J.Chang, M.Zhao, J.Habel, H.Xu, L.Ch D.Nguyen, S.H.Chang, W.Tempel, D.Lin, H.Zhang, J.Praissman, F.E. Jr., M.W.W.Adams, Z.J.Liu, J.P.Rose, B.C.Wang, Southeast Colla For Structural Genomics (Secsg)
compound		source
Molecule: 2-Keto Acid:Ferredoxin Oxidoreductase Subunit Alp Chain: A Engineered: Yes		Organism_scientific: Pyrococcus Furiosus Organism_taxid: 2261 Expression_system: Escherichia Coli Expression_system_taxid: 562
symmetry	Space Group: P 32 1 2	R_factor 0.206 R_Free 0.243
crystal cell	length a length b length c angle alpha angle beta angle gamma 61.448 61.448 129.084 90.00 90.00 120.00
method	X-Ray Diffraction	resolution	2.30 Å
ligand	MSE, UNX	enzyme
note	1YD7 is a representative structure
Gene Ontology	Chain Function Process Component A

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (34 Kb) [Save to disk] Biological Unit Coordinates (1yd7.pdb1.gz) 28 Kb LPC: Ligand-Protein Contacts for 1YD7 CSU: Contacts of Structural Units for 1YD7 Likely Quarternary Molecular Structure file(s) for 1YD7 Structure Factors (185 Kb) Retrieve 1YD7 in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 1YD7 from S2C, [Save to disk] Re-refined 1yd7 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 1YD7 in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 1YD7

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 1YD7, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [1yd7_A] [1yd7] SWISS-PROT database: [Q8U046] Domain organization of [Q8U046_PYRFU] by SWISSPFAM

Other resources with information on 1YD7

Community annotation for 1YD7 at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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