1YDO		date
authors
compound		source
symmetry		R_factor R_Free
crystal cell	length a length b length c angle alpha angle beta angle gamma
method	X-Ray Diffraction	resolution
ligand	IOD, MSE	enzyme
Gene Ontology	Chain Function Process Component D, B, C, A
Primary reference	Crystal structures of two bacterial 3-hydroxy-3-methylglutaryl-CoA lyases suggest a common catalytic mechanism among a family of TIM barrel metalloenzymes cleaving carbon-carbon bonds., Forouhar F, Hussain M, Farid R, Benach J, Abashidze M, Edstrom WC, Vorobiev SM, Xiao R, Acton TB, Fu Z, Kim JJ, Miziorko HM, Montelione GT, Hunt JF, J Biol Chem. 2006 Mar 17;281(11):7533-45. Epub 2005 Dec 5. PMID:16330546

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (196 Kb) [Save to disk] Biological Unit Coordinates (1ydo.pdb1.gz) 96 Kb Biological Unit Coordinates (1ydo.pdb2.gz) 96 Kb Biological Unit Coordinates (1ydo.pdb3.gz) 189 Kb LPC: Ligand-Protein Contacts for 1YDO CSU: Contacts of Structural Units for 1YDO Likely Quarternary Molecular Structure file(s) for 1YDO Retrieve 1YDO in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 1YDO from S2C, [Save to disk]

View 1YDO in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [1ydo] [1ydo_A] [1ydo_B] [1ydo_C] [1ydo_D] SWISS-PROT database: [O34873]

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