1YDR	STRUCTURE OF CAMP-DEPENDENT PROTEIN KINASE, ALPHA-CATALYTIC SUBUNIT IN COMPLEX WITH H7 PROTEIN KINASE INHIBITOR 1-(5-ISOQUINOLINESULFONYL)-2-METHYLPIPERAZINE	date
authors	Engh, R.A., Girod, A., Kinzel, V., Huber, R., Bossemeyer, D.
compound		source
symmetry		R_factor R_Free
crystal cell	length a length b length c angle alpha angle beta angle gamma
method	X-Ray Diffraction	resolution	2.20
ligand	IQP, SEP, TPO BindingDB	enzyme
related structures	by homologous chain: 1FMO, 1YDS
Gene Ontology	Chain Function Process Component E I
Primary reference	Crystal structures of catalytic subunit of cAMP-dependent protein kinase in complex with isoquinolinesulfonyl protein kinase inhibitors H7, H8, and H89. Structural implications for selectivity., Engh RA, Girod A, Kinzel V, Huber R, Bossemeyer D, J Biol Chem 1996 Oct 18;271(42):26157-64. PMID:8824261

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (65 Kb) [Save to disk] Biological Unit Coordinates (1ydr.pdb1.gz) 61 Kb LPC: Ligand-Protein Contacts for 1YDR CSU: Contacts of Structural Units for 1YDR Likely Quarternary Molecular Structure file(s) for 1YDR Structure Factors (195 Kb) Retrieve 1YDR in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 1YDR from S2C, [Save to disk] Re-refined 1ydr structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 1YDR in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 1YDR

Cartoon representation from PDB Cartoon Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute Crystal Contacts, from CryCo at Weizmann Institute 3D motif for 1YDR, from MSDmotif at EBI Genome occurence of 1YDR's fold from GeneCensus Classification of representative domains in scop (Structural Classification of Proteins)     - Domain d1ydre_, region E [Jmol] [rasmolscript] [script source] Fold representative 1ydr from FSSP and Dali (Families of Structurally Similar Proteins) Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH Summaries and structural analyses of PDB data files from PDBSum Identification of Protein Pockets & Cavities at CASTp

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [1ydr_E] [1ydr] [1ydr_I] SWISS-PROT database: [P61925] [P00517] Domain organization of [IPKA_HUMAN] [KAPCA_BOVIN] by SWISSPFAM Domains found in 1YDR: [S_TK_X] [S_TKc ] by SMART

Other resources with information on 1YDR

Community annotation for 1YDR at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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