1YDR STRUCTURE OF CAMP-DEPENDENT PROTEIN KINASE, ALPHA-CATALYTIC SUBUNIT IN COMPLEX WITH H7 PROTEIN KINASE INHIBITOR 1-(5-ISOQUINOLINESULFONYL)-2-METHYLPIPERAZINE date
authors Engh, R.A., Girod, A., Kinzel, V., Huber, R., Bossemeyer, D.
compound source
symmetry
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 2.20
ligand IQP, SEP, TPO BindingDB enzyme
related structures by homologous chain: 1FMO, 1YDS
Gene
Ontology
ChainFunctionProcessComponent
E


I


Primary referenceCrystal structures of catalytic subunit of cAMP-dependent protein kinase in complex with isoquinolinesulfonyl protein kinase inhibitors H7, H8, and H89. Structural implications for selectivity., Engh RA, Girod A, Kinzel V, Huber R, Bossemeyer D, J Biol Chem 1996 Oct 18;271(42):26157-64. PMID:8824261
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (65 Kb) [Save to disk]
  • Biological Unit Coordinates (1ydr.pdb1.gz) 61 Kb
  • LPC: Ligand-Protein Contacts for 1YDR
  • CSU: Contacts of Structural Units for 1YDR
  • Likely Quarternary Molecular Structure file(s) for 1YDR
  • Structure Factors (195 Kb)
  • Retrieve 1YDR in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1YDR from S2C, [Save to disk]
  • Re-refined 1ydr structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1YDR in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1YDR
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 1YDR, from MSDmotif at EBI
  • Genome occurence of 1YDR's fold from GeneCensus
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1ydre_, region E [Jmol] [rasmolscript] [script source]
  • Fold representative 1ydr from FSSP and Dali (Families of Structurally Similar Proteins)
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1ydr_E] [1ydr] [1ydr_I]
  • SWISS-PROT database: [P61925] [P00517]
  • Domain organization of [IPKA_HUMAN] [KAPCA_BOVIN] by SWISSPFAM
  • Domains found in 1YDR: [S_TK_X] [S_TKc ] by SMART
  • Other resources with information on 1YDR
  • Community annotation for 1YDR at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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