1YEH	Catalytic Antibody	date	May 29, 1997
title	Structure Of Igg2a Fab Fragment
authors	B.Gigant, M.Knossow
compound		source
Molecule: Fab Fragment Chain: L Other_details: Ig Gamma-2a Chain C Region (D2.3)		Fragment: Fab Organism_scientific: Mus Musculus Organism_common: House Mouse Organism_taxid: 10090
Molecule: Fab Fragment Chain: H Other_details: Ig Gamma-2a Chain C Region (D2.3)		Fragment: Fab Organism_scientific: Mus Musculus Organism_common: House Mouse Organism_taxid: 10090
symmetry	Space Group: P 31 2 1	R_factor 0.181 R_Free 0.231
crystal cell	length a length b length c angle alpha angle beta angle gamma 78.470 78.470 158.920 90.00 90.00 120.00
method	X-Ray Diffraction	resolution	2.55 Å
ligand	ZN	enzyme
related structures	by homologous chain: 1OTS, 1TQB, 1V7M
Primary reference	X-ray structures of a hydrolytic antibody and of complexes elucidate catalytic pathway from substrate binding and transition state stabilization through water attack and product release., Gigant B, Charbonnier JB, Eshhar Z, Green BS, Knossow M, Proc Natl Acad Sci U S A 1997 Jul 22;94(15):7857-61. PMID:9223277

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (77 Kb) [Save to disk] Biological Unit Coordinates (1yeh.pdb1.gz) 72 Kb Biological Unit Coordinates (1yeh.pdb2.gz) 72 Kb LPC: Ligand-Protein Contacts for 1YEH CSU: Contacts of Structural Units for 1YEH Likely Quarternary Molecular Structure file(s) for 1YEH Retrieve 1YEH in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 1YEH from S2C, [Save to disk]

View 1YEH in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 1YEH

Ramachandran plot from PDBSum

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 1YEH, from MSDmotif at EBI Genome occurence of 1YEH's fold from GeneCensus Classification of representative domains in scop (Structural Classification of Proteins)     - Domain d1yehh1, region H:1-113 [Jmol] [rasmolscript] [script source]     - Domain d1yehh2, region H:114-223 [Jmol] [rasmolscript] [script source]     - Domain d1yehl1, region L:1-107 [Jmol] [rasmolscript] [script source]     - Domain d1yehl2, region L:108-214 [Jmol] [rasmolscript] [script source] Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH Summaries and structural analyses of PDB data files from PDBSum Identification of Protein Pockets & Cavities at CASTp

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [1yeh] [1yeh_H] [1yeh_L] SWISS-PROT database: [P01863] Domain organization of [GCAA_MOUSE] by SWISSPFAM Domains found in 1YEH: [IG_like] [IGv ] by SMART

Other resources with information on 1YEH

Community annotation for 1YEH at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

Movements, Movies and Images

Images from IMB Jena Image Library of Biological Macromolecules.

You may enter another PDB ID code

Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]

---

OCA© by Jaime Prilusky, 1996-2014,2022 Bioinformatics Unit Weizmann Institute of Science

---