1YEL Structural Genomics, Unknown Function date Dec 28, 2004
title Structure Of The Hypothetical Arabidopsis Thaliana Protein A
authors F.C.Peterson, J.K.Waltner, B.L.Lytle, B.F.Volkman, Center For Eu Structural Genomics (Cesg)
compound source
Molecule: At1g16640
Chain: A
Fragment: Sequence Database Residues 1-102
Engineered: Yes
 Organism_scientific: Arabidopsis Thaliana
Organism_common: Thale Cress
Organism_taxid: 3702
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Sg13009[Prep4]
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pqe30
methodSolution NMR
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceStructure of the B3 domain from Arabidopsis thaliana protein At1g16640., Waltner JK, Peterson FC, Lytle BL, Volkman BF, Protein Sci 2005 Sep;14(9):2478-83. Epub 2005 Aug 4. PMID:16081658
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (567 Kb) [Save to disk]
  • Biological Unit Coordinates (1yel.pdb1.gz) 28 Kb
  • CSU: Contacts of Structural Units for 1YEL
  • Original NMR restraints for 1YEL from PDB
  • Experimental data, such as chemical shifts, at BioMagResBank (BMRB)
  • NMR Restraints Grid from BioMagResBank (BMRB)
  • Retrieve 1YEL in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1YEL from S2C, [Save to disk]
    • View 1YEL in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 1YEL
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1YEL, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1yel_A] [1yel]
  • SWISS-PROT database: [Q9FX77]
  • Domain organization of [Y1664_ARATH] by SWISSPFAM
  • Domain found in 1YEL: [B3 ] by SMART
    • Other resources with information on 1YEL
  • Community annotation for 1YEL at PDBWiki (http://pdbwiki.org)
  • NMR Ensemble (OLDERADO: core, domain and representative structure database)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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