1YER Chaperone Protein date Mar 25, 1997
title Human Hsp90 Geldanamycin-Binding Domain, "Closed" Conformation
authors C.E.Stebbins, A.A.Russo, N.P.Pavletich
compound source
Molecule: Heat Shock Protein 90
Chain: A
Fragment: Residues 9 - 236
Synonym: Hsp90
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_plasmid: Pet3d
symmetry Space Group: I 2 2 2
R_factor 0.194 R_Free 0.244
crystal
cell
length a length b length c angle alpha angle beta angle gamma
65.587 88.546 99.346 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.65 Å
related structures by homologous chain: 1BYQ, 1YC1
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceCrystal structure of an Hsp90-geldanamycin complex: targeting of a protein chaperone by an antitumor agent., Stebbins CE, Russo AA, Schneider C, Rosen N, Hartl FU, Pavletich NP, Cell 1997 Apr 18;89(2):239-50. PMID:9108479
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (43 Kb) [Save to disk]
  • Biological Unit Coordinates (1yer.pdb1.gz) 79 Kb
  • CSU: Contacts of Structural Units for 1YER
  • Likely Quarternary Molecular Structure file(s) for 1YER
  • Retrieve 1YER in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1YER from S2C, [Save to disk]
  • View 1YER in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1YER
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 1YER, from MSDmotif at EBI
  • Genome occurence of 1YER's fold from GeneCensus
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1yer__, region [Jmol] [rasmolscript] [script source]
  • Fold representative 1yer from FSSP and Dali (Families of Structurally Similar Proteins)
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1yer] [1yer_A]
  • SWISS-PROT database: [P07900]
  • Domain organization of [HS90A_HUMAN] by SWISSPFAM
  • Domain found in 1YER: [HATPase_c ] by SMART
  • Other resources with information on 1YER
  • Community annotation for 1YER at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Domain movements in 1YER from the Database of Macromolecular Movements.
  • Images from IMB Jena Image Library of Biological Macromolecules.

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