1YGJ Crystal Structure of Pyridoxal Kinase in Complex with Roscovitine and Derivatives date
authors Tang, L., Li, M.H., Cao, P., Wang, F., Chang, W.R., Bach, S., Reinhardt, J., Ferandin, Y., Koken, M., Galons, H., Wan, Y., Gray, N., Meijer, L., Jiang, T., Liang, D.C.
compound source
symmetry
R_factor
R_Free 0.28
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 2.70
ligand RMC enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceCrystal structure of pyridoxal kinase in complex with roscovitine and derivatives., Tang L, Li MH, Cao P, Wang F, Chang WR, Bach S, Reinhardt J, Ferandin Y, Galons H, Wan Y, Gray N, Meijer L, Jiang T, Liang DC, J Biol Chem 2005 Sep 2;280(35):31220-9. Epub 2005 Jun 28. PMID:15985434
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (56 Kb) [Save to disk]
  • Biological Unit Coordinates (1ygj.pdb1.gz) 53 Kb
  • LPC: Ligand-Protein Contacts for 1YGJ
  • CSU: Contacts of Structural Units for 1YGJ
  • Likely Quarternary Molecular Structure file(s) for 1YGJ
  • Structure Factors (54 Kb)
  • Retrieve 1YGJ in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1YGJ from S2C, [Save to disk]
  • Re-refined 1ygj structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1YGJ in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1YGJ
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 1YGJ, from MSDmotif at EBI
  • Fold representative 1ygj from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1ygj_A] [1ygj]
  • SWISS-PROT database: [P82197]
  • Domain organization of [PDXK_SHEEP] by SWISSPFAM
  • Other resources with information on 1YGJ
  • Community annotation for 1YGJ at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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